RNA–Protein interactions for RNA: YGL011C

SCL1, Transcript of Alpha 1 subunit of the 20S proteasome, yeast

Gene SCL1, Length 759 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SCL1	YGL011C	HOS2	P53096	452 aa	Predicted RBP	4.75	□□□□□ -1.65
SCL1	YGL011C	ERG26	P53199	349 aa	Known RBP	4.75	□□□□□ -1.65
SCL1	YGL011C	RSM23	Q01163	450 aa		4.75	□□□□□ -1.65
SCL1	YGL011C	MRPL1	Q04599	285 aa		4.75	□□□□□ -1.65
SCL1	YGL011C	RGT2	Q12300	763 aa		4.75	□□□□□ -1.65
SCL1	YGL011C	ARG81	P05085	880 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	ARG3	P05150	338 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	PUT2	P07275	575 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	SNF3	P10870	884 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	MGM1	P32266	881 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	YBR144C	P34215	104 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	SPO22	P40511	975 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	PTR3	P43606	678 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	FAR3	P46671	204 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	YGR127W	P53275	312 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	YNL234W	P53857	426 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	IPI3	P53877	555 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	RPT6	Q01939	405 aa	Known RBP	4.74	□□□□□ -1.65
SCL1	YGL011C	CTL1	Q03220	320 aa	Known RBP	4.74	□□□□□ -1.65
SCL1	YGL011C	RTP1	Q12751	981 aa		4.74	□□□□□ -1.65
SCL1	YGL011C	UBA4	P38820	440 aa		4.73	□□□□□ -1.65
SCL1	YGL011C	SPC97	P38863	823 aa		4.73	□□□□□ -1.65
SCL1	YGL011C	YEL057C	P39983	233 aa		4.73	□□□□□ -1.65
SCL1	YGL011C	IRC6	P43615	237 aa		4.73	□□□□□ -1.65
SCL1	YGL011C	IMD4	P50094	524 aa	Known RBP	4.73	□□□□□ -1.65
SCL1	YGL011C	ESBP6	P53918	673 aa		4.73	□□□□□ -1.65
SCL1	YGL011C	MSC1	Q03104	513 aa		4.73	□□□□□ -1.65
SCL1	YGL011C	EKI1	Q03764	534 aa		4.73	□□□□□ -1.65
SCL1	YGL011C	TAH18	Q12181	623 aa		4.73	□□□□□ -1.65
SCL1	YGL011C	CDC31	P06704	161 aa	Known RBP	4.72	□□□□□ -1.65
SCL1	YGL011C	OCA4	P25366	362 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	BOS1	P25385	244 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	SEF1	P34228	1148 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	MTR2	P34232	184 aa	Known RBP	4.72	□□□□□ -1.65
SCL1	YGL011C	YKL100C	P34248	587 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	ICS2	P38284	255 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	PHO90	P39535	881 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	DOT5	P40553	215 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	PYK2	P52489	506 aa	Known RBP	4.72	□□□□□ -1.65
SCL1	YGL011C	VID30	P53076	958 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	YGR066C	P53242	292 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	ECI1	Q05871	280 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	MLH2	Q07980	695 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	RDR1	Q08904	546 aa		4.72	□□□□□ -1.65
SCL1	YGL011C	BUD5	P25300	642 aa	Predicted RBP	4.71	□□□□□ -1.66
SCL1	YGL011C	PDR3	P33200	976 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	TCD2	P36101	447 aa	Known RBP	4.71	□□□□□ -1.66
SCL1	YGL011C	RPL32	P38061	130 aa	Known RBP	4.71	□□□□□ -1.66
SCL1	YGL011C	PCL6	P40038	420 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	ALG5	P40350	334 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	YIL152W	P40455	235 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	RMD8	P43620	662 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	SOL4	P53315	255 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	MRPL19	P53875	158 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	YNL181W	P53878	407 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	NUP100	Q02629	959 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	ETT1	Q08421	412 aa	Known RBP	4.71	□□□□□ -1.66
SCL1	YGL011C	DSE3	Q08729	430 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	RLM1	Q12224	676 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	UBX3	Q12229	455 aa		4.71	□□□□□ -1.66
SCL1	YGL011C	GAL80	P04387	435 aa		4.7	□□□□□ -1.66
SCL1	YGL011C	ATO2	P32907	282 aa		4.7	□□□□□ -1.66
SCL1	YGL011C	BET4	Q00618	327 aa		4.7	□□□□□ -1.66
SCL1	YGL011C	YMR034C	Q05131	434 aa	Predicted RBP	4.7	□□□□□ -1.66
SCL1	YGL011C	VPS38	Q05919	439 aa		4.7	□□□□□ -1.66
SCL1	YGL011C	MET17	P06106	444 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	DFR1	P07807	211 aa	Known RBP RIP-Chip data	4.69	□□□□□ -1.66	not detected
SCL1	YGL011C	YFL068W	P0CX99	160 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	YLL066W-A	P0CY00	160 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	YLL067W-A	P0CY01	160 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	ART10	P18634	518 aa	Known RBP	4.69	□□□□□ -1.66
SCL1	YGL011C	MGR1	P25573	417 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	YPK3	P38070	525 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	ROT2	P38138	954 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	MET28	P40573	187 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	RTS2	P40962	232 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	FET5	P43561	622 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	BOP3	P53958	396 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	COQ9	Q05779	260 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	AVL9	Q12500	764 aa		4.69	□□□□□ -1.66
SCL1	YGL011C	PDA1	P16387	420 aa	Known RBP	4.68	□□□□□ -1.66
SCL1	YGL011C	WBP1	P33767	430 aa	Known RBP	4.68	□□□□□ -1.66
SCL1	YGL011C	ARF3	P40994	183 aa	RIP-Chip data	4.68	□□□□□ -1.66	not detected
SCL1	YGL011C	PET130	P47065	347 aa		4.68	□□□□□ -1.66
SCL1	YGL011C	DUG3	P53871	357 aa		4.68	□□□□□ -1.66
SCL1	YGL011C	DIG1	Q03063	452 aa	Known RBP	4.68	□□□□□ -1.66
SCL1	YGL011C	TAF11	Q04226	346 aa		4.68	□□□□□ -1.66
SCL1	YGL011C	SNA4	Q07549	140 aa		4.68	□□□□□ -1.66
SCL1	YGL011C	BSC1	Q12140	328 aa		4.68	□□□□□ -1.66
SCL1	YGL011C	CKA1	P15790	372 aa		4.67	□□□□□ -1.66
SCL1	YGL011C	SGV1	P23293	657 aa	Known RBP	4.67	□□□□□ -1.66
SCL1	YGL011C	ELO2	P25358	347 aa		4.67	□□□□□ -1.66
SCL1	YGL011C	RPS2	P25443	254 aa	Known RBP	4.67	□□□□□ -1.66
SCL1	YGL011C	GID7	P25569	745 aa		4.67	□□□□□ -1.66
SCL1	YGL011C	MCM4	P30665	933 aa	Known RBP	4.67	□□□□□ -1.66
SCL1	YGL011C	TMT1	P32643	299 aa		4.67	□□□□□ -1.66
SCL1	YGL011C	ARC40	P38328	384 aa	Known RBP	4.67	□□□□□ -1.66
SCL1	YGL011C	EFM2	P38347	419 aa		4.67	□□□□□ -1.66
SCL1	YGL011C	CIN4	P39110	191 aa		4.67	□□□□□ -1.66
SCL1	YGL011C	IAH1	P41734	238 aa		4.67	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 21.6 ms