RNA–Protein interactions for RNA: YFR010W

UBP6, Transcript of Ubiquitin-specific protease, yeast

Gene UBP6, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP6	YFR010W	PNC1	P53184	216 aa	Known RBP	4.12	□□□□□ -1.75
UBP6	YFR010W	RRP46	P53256	223 aa	Predicted RBP	4.12	□□□□□ -1.75
UBP6	YFR010W	COQ6	P53318	479 aa		4.12	□□□□□ -1.75
UBP6	YFR010W	PET117	Q02771	107 aa		4.12	□□□□□ -1.75
UBP6	YFR010W	KAP120	Q02932	1032 aa		4.12	□□□□□ -1.75
UBP6	YFR010W	LRS4	Q04087	347 aa	Known RBP	4.12	□□□□□ -1.75
UBP6	YFR010W	DSE3	Q08729	430 aa		4.12	□□□□□ -1.75
UBP6	YFR010W	VIK1	Q12045	647 aa		4.12	□□□□□ -1.75
UBP6	YFR010W	TGS1	Q12052	315 aa		4.12	□□□□□ -1.75
UBP6	YFR010W	RIO1	Q12196	484 aa	Known RBP	4.12	□□□□□ -1.75
UBP6	YFR010W	YJR112W-A	Q3E743	109 aa		4.12	□□□□□ -1.75
UBP6	YFR010W	YBR182C-A	Q8TGU6	64 aa		4.12	□□□□□ -1.75
UBP6	YFR010W	Q0142	Q9ZZW4	58 aa		4.12	□□□□□ -1.75
UBP6	YFR010W	LPD1	P09624	499 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	PCK1	P10963	549 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	SEN2	P16658	377 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	SEC15	P22224	910 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	SNT1	P25357	1226 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	YCL002C	P25565	263 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	IMG2	P25642	146 aa	Predicted RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	MCM4	P30665	933 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	SYN8	P31377	255 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	ARO4	P32449	370 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	YME1	P32795	747 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	PRS1	P32895	427 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	GDH2	P33327	1092 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	LST4	P34239	828 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	NUP133	P36161	1157 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	ADE17	P38009	592 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	GIC1	P38785	314 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	SSZ1	P38788	538 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.11	□□□□□ -1.75	not detected
UBP6	YFR010W	PRM9	P39551	298 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	ZRG8	P40021	1076 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	IST3	P40565	148 aa	Predicted RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	OTU1	P43558	301 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	EMC2	P47133	292 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	AAD10	P47182	288 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	SRT1	Q03175	343 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	ECM11	Q04110	302 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	RQC1	Q05468	723 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	CRR1	Q05790	422 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	TMA10	Q06177	86 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	ABP140	Q08641	628 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	OSW2	Q12202	724 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	YOL107W	Q12239	342 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	YDR061W	Q12298	539 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	SEC3	P33332	1336 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	RPS17A	P02407	136 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	TPK2	P06245	380 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	SSA3	P09435	649 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	TY2A-LR1	P0C2J4	438 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	TY2A-F	P0CX61	438 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	TY2A-GR2	P0CX62	438 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	RPS17B	P14127	136 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	PRP16	P15938	1071 aa	Predicted RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	SRV2	P17555	526 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	TY2A-C	P25383	438 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	FAA1	P30624	700 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	PET100	P38958	111 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	NPP2	P39997	493 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	DOT5	P40553	215 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	NET1	P47035	1189 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	URB2	P47108	1174 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	RMD9	P53140	646 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	YGR066C	P53242	292 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	YGR117C	P53270	476 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	CSL4	P53859	292 aa	Predicted RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	SQS1	P53866	767 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	HEF3	P53978	1044 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	ARP4	P80428	489 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	SRL4	Q03085	281 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	NGL2	Q03264	515 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	TY2A-DR2	Q03483	438 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	GIS1	Q03833	894 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	RPN9	Q04062	393 aa	Known RBP	4.11	□□□□□ -1.75
UBP6	YFR010W	PPN1	Q04119	674 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	GIM5	Q04493	163 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	CRF1	Q04930	467 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	YLR407W	Q06070	228 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	CRD1	Q07560	283 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	YLL007C	Q07799	665 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	YEH1	Q07804	573 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	TPO1	Q07824	586 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	ATG29	Q12092	213 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	TY2A-B	Q12260	438 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	TY2A-OR2	Q12293	438 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	NTO1	Q12311	748 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	TY2A-DR1	Q12392	438 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	TY2A-OR1	Q12439	438 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	YLR149C	Q99296	730 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	TY2A-DR3	Q99303	438 aa		4.11	□□□□□ -1.75
UBP6	YFR010W	YPR089W	O13585	888 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	PRC1	P00729	532 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	CDC37	P06101	506 aa	Known RBP	4.1	□□□□□ -1.75
UBP6	YFR010W	CBP1	P07252	654 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	HEM1	P09950	548 aa	Predicted RBP	4.1	□□□□□ -1.75
UBP6	YFR010W	APA2	P22108	325 aa		4.1	□□□□□ -1.75
UBP6	YFR010W	UBA1	P22515	1024 aa	Known RBP	4.1	□□□□□ -1.75
UBP6	YFR010W	PET18	P25362	215 aa		4.1	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 19.9 ms