RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 HAND2P61296 217 aa16.47■□□□□ 0.23
LINC00339-211ENST00000641009 TRIM60Q495X7 471 aa16.47■□□□□ 0.23
LINC00339-211ENST00000641009 MAMDC4Q6UXC1 1216 aa16.47■□□□□ 0.23
LINC00339-211ENST00000641009 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.47■□□□□ 0.23
LINC00339-211ENST00000641009 PLEKHM2Q8IWE5 1019 aa16.47■□□□□ 0.23
LINC00339-211ENST00000641009 MSL3Q8N5Y2 521 aaKnown RBP16.47■□□□□ 0.23
LINC00339-211ENST00000641009 FGD4Q96M96 766 aa16.47■□□□□ 0.23
LINC00339-211ENST00000641009 AGBL1Q96MI9 1066 aa16.47■□□□□ 0.23
LINC00339-211ENST00000641009 FBXO40Q9UH90 709 aa16.47■□□□□ 0.23
LINC00339-211ENST00000641009 CCDC171Q6TFL3 1326 aa16.46■□□□□ 0.23
LINC00339-211ENST00000641009 MYH6P13533 1939 aa16.46■□□□□ 0.23
LINC00339-211ENST00000641009 FDX1P10109 184 aa16.46■□□□□ 0.23
LINC00339-211ENST00000641009 NOVP48745 357 aa16.46■□□□□ 0.23
LINC00339-211ENST00000641009 NUCB1Q02818 461 aa16.46■□□□□ 0.23
LINC00339-211ENST00000641009 SNX17Q15036 470 aa16.46■□□□□ 0.23
LINC00339-211ENST00000641009 RCSD1Q6JBY9 416 aa16.46■□□□□ 0.23
LINC00339-211ENST00000641009 ZNF467Q7Z7K2 595 aaPredicted RBP16.46■□□□□ 0.23
LINC00339-211ENST00000641009 RNF180Q86T96 592 aa16.46■□□□□ 0.23
LINC00339-211ENST00000641009 TICAM2Q86XR7 235 aa16.46■□□□□ 0.23
LINC00339-211ENST00000641009 LBHD1Q9BQE6 289 aaPredicted RBP16.46■□□□□ 0.23
LINC00339-211ENST00000641009 ZHX1Q9UKY1 873 aaPredicted RBP16.46■□□□□ 0.23
LINC00339-211ENST00000641009 PHF24Q9UPV7 400 aa16.46■□□□□ 0.23
LINC00339-211ENST00000641009 SDSP20132 328 aa16.45■□□□□ 0.22
LINC00339-211ENST00000641009 LRIT3Q3SXY7 679 aa16.45■□□□□ 0.22
LINC00339-211ENST00000641009 CCDC174Q6PII3 467 aa16.45■□□□□ 0.22
LINC00339-211ENST00000641009 ACAD9Q9H845 621 aa16.45■□□□□ 0.22
LINC00339-211ENST00000641009 RNF146Q9NTX7 359 aa16.45■□□□□ 0.22
LINC00339-211ENST00000641009 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.45■□□□□ 0.22
LINC00339-211ENST00000641009 PRKAG2Q9UGJ0 569 aa16.45■□□□□ 0.22
LINC00339-211ENST00000641009 PRR12Q9ULL5 1215 aa16.45■□□□□ 0.22
LINC00339-211ENST00000641009 ZMYM6O95789 1325 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 SYNRGQ9UMZ2 1314 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 PLA2G6O60733 806 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 ADAMTS4O75173 837 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 ALAS1P13196 640 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 CNTN2Q02246 1040 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 ACVR2BQ13705 512 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 CCDC96Q2M329 555 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 OSBPL3Q9H4L5 887 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 A1CFQ9NQ94 594 aaKnown RBP16.44■□□□□ 0.22
LINC00339-211ENST00000641009 PRDM5Q9NQX1 630 aaPredicted RBP16.44■□□□□ 0.22
LINC00339-211ENST00000641009 FAM184BQ9ULE4 1060 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 CDH23Q9H251 3354 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 A0A0C4DFX4 3053 aa16.44■□□□□ 0.22
LINC00339-211ENST00000641009 EYSQ5T1H1 3165 aa16.43■□□□□ 0.22
LINC00339-211ENST00000641009 A0A1W2PQ45 241 aaPredicted RBP16.43■□□□□ 0.22
LINC00339-211ENST00000641009 A0A1W2PQY0 241 aa16.43■□□□□ 0.22
LINC00339-211ENST00000641009 ADCY6O43306 1168 aa16.43■□□□□ 0.22
LINC00339-211ENST00000641009 ARMCX2Q7L311 632 aa16.43■□□□□ 0.22
LINC00339-211ENST00000641009 CCDC144CPQ8IYA2 1237 aa16.43■□□□□ 0.22
LINC00339-211ENST00000641009 DCAF4Q8WV16 495 aa16.43■□□□□ 0.22
LINC00339-211ENST00000641009 TRERF1Q96PN7 1200 aa16.43■□□□□ 0.22
LINC00339-211ENST00000641009 POTEB2H3BUK9 544 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 SLC16A2P36021 539 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 IRX5P78411 483 aaPredicted RBP16.42■□□□□ 0.22
LINC00339-211ENST00000641009 CCDC144BQ3MJ40 725 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 MUM1L1Q5H9M0 696 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 AKNAD1Q5T1N1 836 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 C1orf53Q5VUE5 145 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 TTBK2Q6IQ55 1244 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 CWC27Q6UX04 472 aaKnown RBP16.42■□□□□ 0.22
LINC00339-211ENST00000641009 SH3RF1Q7Z6J0 888 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 TBC1D10CQ8IV04 446 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 FAM133AQ8N9E0 248 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 TMEM47Q9BQJ4 181 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 ABHD16BQ9H3Z7 469 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 PDLIM7Q9NR12 457 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 FRMPD2Q68DX3 1309 aaPredicted RBP16.42■□□□□ 0.22
LINC00339-211ENST00000641009 MYADML2A6NDP7 307 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 TOP1P11387 765 aaKnown RBP16.42■□□□□ 0.22
LINC00339-211ENST00000641009 MFAP1P55081 439 aaKnown RBP16.42■□□□□ 0.22
LINC00339-211ENST00000641009 TLE2Q04725 743 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 TKFCQ3LXA3 575 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 MFSD6Q6ZSS7 791 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 KLHDC9Q8NEP7 349 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 TCP11L1Q9NUJ3 509 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 CCPG1Q9ULG6 757 aa16.42■□□□□ 0.22
LINC00339-211ENST00000641009 SUPT16HQ9Y5B9 1047 aaKnown RBP16.42■□□□□ 0.22
LINC00339-211ENST00000641009 UNC80Q8N2C7 3258 aa16.41■□□□□ 0.22
LINC00339-211ENST00000641009 TRIM43BA6NCK2 446 aa16.41■□□□□ 0.22
LINC00339-211ENST00000641009 SOWAHBA6NEL2 793 aa16.41■□□□□ 0.22
LINC00339-211ENST00000641009 DUSP11O75319 330 aaKnown RBP16.41■□□□□ 0.22
LINC00339-211ENST00000641009 ACLYP53396 1101 aa16.41■□□□□ 0.22
LINC00339-211ENST00000641009 KCNA10Q16322 511 aa16.41■□□□□ 0.22
LINC00339-211ENST00000641009 Q7L0L9 218 aa16.41■□□□□ 0.22
LINC00339-211ENST00000641009 BADQ92934 168 aa16.41■□□□□ 0.22
LINC00339-211ENST00000641009 TRIM43Q96BQ3 446 aaPredicted RBP16.41■□□□□ 0.22
LINC00339-211ENST00000641009 TSEN34Q9BSV6 310 aaKnown RBP16.41■□□□□ 0.22
LINC00339-211ENST00000641009 KATNBL1Q9H079 304 aa16.41■□□□□ 0.22
LINC00339-211ENST00000641009 GPCPD1Q9NPB8 672 aa16.41■□□□□ 0.22
LINC00339-211ENST00000641009 DIAPH3Q9NSV4 1193 aa16.41■□□□□ 0.22
LINC00339-211ENST00000641009 DDX49Q9Y6V7 483 aaKnown RBP16.41■□□□□ 0.22
LINC00339-211ENST00000641009 ASTN1O14525 1302 aa16.4■□□□□ 0.22
LINC00339-211ENST00000641009 NEDD4P46934 1319 aa16.4■□□□□ 0.22
LINC00339-211ENST00000641009 PQBP1O60828 265 aaKnown RBP16.4■□□□□ 0.22
LINC00339-211ENST00000641009 C6orf222P0C671 652 aaPredicted RBP16.4■□□□□ 0.22
LINC00339-211ENST00000641009 SYDE2Q5VT97 1194 aa16.4■□□□□ 0.22
LINC00339-211ENST00000641009 CCSAPQ6IQ19 270 aaPredicted RBP16.4■□□□□ 0.22
LINC00339-211ENST00000641009 GPR153Q6NV75 609 aa16.4■□□□□ 0.22
LINC00339-211ENST00000641009 RANBP17Q9H2T7 1088 aaKnown RBP16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms