RNA–Protein interactions for RNA: ENST00000640748.1

ERGIC3-220, Transcript of ERGIC and golgi 3, humanhuman

TSL 5 BASIC

Gene ERGIC3, Length 832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ERGIC3-220ENST00000640748 LRRC41Q15345 812 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 TRIM60Q495X7 471 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 FAM47AQ5JRC9 791 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 Q6ZUG5 572 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 NCAPG2Q86XI2 1143 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 IFNL3Q8IZI9 196 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 CCDC17Q96LX7 622 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 TCEANC2Q96MN5 208 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 LARP6Q9BRS8 491 aaKnown RBP13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 NAPBQ9H115 298 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 ARHGEF10LQ9HCE6 1279 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 ATP11BQ9Y2G3 1177 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 BAZ2AQ9UIF9 1905 aaKnown RBP13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 EYSQ5T1H1 3165 aa13.89□□□□□ -0.19
ERGIC3-220ENST00000640748 KBTBD13C9JR72 458 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 LARGE1O95461 756 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 PGK2P07205 417 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 FCER1AP12319 257 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 ADCYAP1R1P41586 468 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 EXOSC10Q01780 885 aaKnown RBP13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 TRDNQ13061 729 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 SHHQ15465 462 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 ME3Q16798 604 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 C9orf50Q5SZB4 431 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 CTR9Q6PD62 1173 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 SH3RF1Q7Z6J0 888 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 REPS2Q8NFH8 660 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 NCOA7Q8NI08 942 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 TNPO1Q92973 898 aaKnown RBP13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 GBP4Q96PP9 640 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 PDLIM7Q9NR12 457 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 TPCN1Q9ULQ1 816 aa13.88□□□□□ -0.19
ERGIC3-220ENST00000640748 TRIM43BA6NCK2 446 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 GSG1L2A8MUP6 293 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 VWA5AO00534 786 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 TAL1P17542 331 aaPredicted RBP13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 TDO2P48775 406 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 COL9A3Q14050 684 aaPredicted RBP13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 ZNF792Q3KQV3 632 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 C1orf53Q5VUE5 145 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 SAMD1Q6SPF0 538 aaPredicted RBP13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 RALYLQ86SE5 291 aaKnown RBP13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 RIOX2Q8IUF8 465 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 CCDC83Q8IWF9 413 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 FERMT2Q96AC1 680 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 TRIM43Q96BQ3 446 aaPredicted RBP13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 SH2D4AQ9H788 454 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 KANSL2Q9H9L4 492 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 EPB41L4AQ9HCS5 686 aaPredicted RBP13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 SLC5A4Q9NY91 659 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 ZNF214Q9UL59 606 aaPredicted RBP13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 SMC3Q9UQE7 1217 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 WDR19Q8NEZ3 1342 aa13.87□□□□□ -0.19
ERGIC3-220ENST00000640748 SLC25A27O95847 323 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 MYCNP04198 464 aaPredicted RBP13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 ITGB8P26012 769 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 MCM4P33991 863 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 MCM5P33992 734 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 BADQ92934 168 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 FAM161BQ96MY7 647 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 MMP19Q99542 508 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 AGXT2Q9BYV1 514 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 PRKAG2Q9UGJ0 569 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 NRBP1Q9UHY1 535 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 PPP1R9AQ9ULJ8 1098 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 PHF24Q9UPV7 400 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 MYH8P13535 1937 aa13.86□□□□□ -0.19
ERGIC3-220ENST00000640748 COL11A1P12107 1806 aaPredicted RBP13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 ROBO3Q96MS0 1386 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 CDH23Q9H251 3354 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 PGK1P00558 417 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 ZNF865P0CJ78 1059 aaPredicted RBP13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 TLE2Q04725 743 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 FAM83BQ5T0W9 1011 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 MB21D2Q8IYB1 491 aaPredicted RBP13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 FBXL16Q8N461 479 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 BRF1Q92994 677 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 LENG1Q96BZ8 264 aaPredicted RBP13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 CHMP4CQ96CF2 233 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 TINF2Q9BSI4 451 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 LRRC2Q9BYS8 371 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 XPNPEP3Q9NQH7 507 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 PRDM5Q9NQX1 630 aaPredicted RBP13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 DIS3Q9Y2L1 958 aaKnown RBP13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 GREB1LQ9C091 1923 aaPredicted RBP13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 SMCHD1A6NHR9 2005 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 VCANP13611 3396 aa13.85□□□□□ -0.19
ERGIC3-220ENST00000640748 PRUNE2Q8WUY3 3088 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 DDX11L8A8MPP1 907 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 PRC1O43663 620 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 RASA1P20936 1047 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 PTMSP20962 102 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 STAT3P40763 770 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 EPHB4P54760 987 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 GIMAP6Q6P9H5 292 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 TBC1D10CQ8IV04 446 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 NECAB1Q8N987 351 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 NUP88Q99567 741 aaPredicted RBP13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 CNNM2Q9H8M5 875 aa13.84□□□□□ -0.19
ERGIC3-220ENST00000640748 GOPCQ9HD26 462 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms