RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 ZNF576Q9H609 170 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 HOMER2Q9NSB8 354 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 MTMR4Q9NYA4 1195 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 FBXO40Q9UH90 709 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 MYH4Q9Y623 1939 aa23.15■■□□□ 1.3
CLN3-262ENST00000637699 MCM3APO60318 1980 aa23.14■■□□□ 1.3
CLN3-262ENST00000637699 RNF113AO15541 343 aaKnown RBP23.14■■□□□ 1.29
CLN3-262ENST00000637699 GPAA1O43292 621 aa23.14■■□□□ 1.29
CLN3-262ENST00000637699 GJA9P57773 515 aa23.14■■□□□ 1.29
CLN3-262ENST00000637699 C16orf59Q7L2K0 433 aa23.14■■□□□ 1.29
CLN3-262ENST00000637699 CHST13Q8NET6 341 aa23.14■■□□□ 1.29
CLN3-262ENST00000637699 UPF3AQ9H1J1 476 aaKnown RBP23.14■■□□□ 1.29
CLN3-262ENST00000637699 ZNF287Q9HBT7 754 aa23.14■■□□□ 1.29
CLN3-262ENST00000637699 ISY1Q9ULR0 285 aaKnown RBP23.14■■□□□ 1.29
CLN3-262ENST00000637699 M0R2C6 588 aa23.13■■□□□ 1.29
CLN3-262ENST00000637699 ARVCFO00192 962 aa23.13■■□□□ 1.29
CLN3-262ENST00000637699 TTLL1O95922 423 aa23.13■■□□□ 1.29
CLN3-262ENST00000637699 CSF2RAP15509 400 aa23.13■■□□□ 1.29
CLN3-262ENST00000637699 PPIGQ13427 754 aaKnown RBP eCLIP23.13■■□□□ 1.296e-7■■□□□ 11.8
CLN3-262ENST00000637699 TMEM240Q5SV17 173 aa23.13■■□□□ 1.29
CLN3-262ENST00000637699 C20orf194Q5TEA3 1177 aa23.13■■□□□ 1.29
CLN3-262ENST00000637699 DHX30Q7L2E3 1194 aaKnown RBP eCLIP23.13■■□□□ 1.29
CLN3-262ENST00000637699 CCDC144CPQ8IYA2 1237 aa23.13■■□□□ 1.29
CLN3-262ENST00000637699 USP38Q8NB14 1042 aa23.13■■□□□ 1.29
CLN3-262ENST00000637699 PPP1R12CQ9BZL4 782 aa23.13■■□□□ 1.29
CLN3-262ENST00000637699 TTC28Q96AY4 2481 aa23.13■■□□□ 1.29
CLN3-262ENST00000637699 A0A0U1RQG5 324 aaPredicted RBP23.12■■□□□ 1.29
CLN3-262ENST00000637699 GRXCR1A8MXD5 290 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 BMP3P12645 472 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 GNAT2P19087 354 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 OAZ1P54368 228 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 CNTN2Q02246 1040 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 SLFN13Q68D06 897 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 CCDC174Q6PII3 467 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 CCDC129Q6ZRS4 1044 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 GMCL1P1Q8NEA9 526 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 SYMPKQ92797 1274 aaKnown RBP23.12■■□□□ 1.29
CLN3-262ENST00000637699 CHMP4CQ96CF2 233 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 GPATCH3Q96I76 525 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 RCAN3Q9UKA8 241 aa23.12■■□□□ 1.29
CLN3-262ENST00000637699 ZFYP08048 801 aaPredicted RBP23.11■■□□□ 1.29
CLN3-262ENST00000637699 ACRP10323 421 aa23.11■■□□□ 1.29
CLN3-262ENST00000637699 PBX2P40425 430 aa23.11■■□□□ 1.29
CLN3-262ENST00000637699 BEX3Q00994 111 aa23.11■■□□□ 1.29
CLN3-262ENST00000637699 NOL8Q76FK4 1167 aaKnown RBP23.11■■□□□ 1.29
CLN3-262ENST00000637699 IFNL3Q8IZI9 196 aa23.11■■□□□ 1.29
CLN3-262ENST00000637699 TMEM199Q8N511 208 aa23.11■■□□□ 1.29
CLN3-262ENST00000637699 KATNBL1Q9H079 304 aa23.11■■□□□ 1.29
CLN3-262ENST00000637699 PATL2C9JE40 543 aaKnown RBP23.1■■□□□ 1.29
CLN3-262ENST00000637699 TMEM232C9JQI7 657 aa23.1■■□□□ 1.29
CLN3-262ENST00000637699 TLR3O15455 904 aaKnown RBP23.1■■□□□ 1.29
CLN3-262ENST00000637699 TSPY3P0CV98 308 aa23.1■■□□□ 1.29
CLN3-262ENST00000637699 TSPY8P0CW00 308 aa23.1■■□□□ 1.29
CLN3-262ENST00000637699 ZNF365Q70YC5 407 aa23.1■■□□□ 1.29
CLN3-262ENST00000637699 FAM126BQ8IXS8 530 aa23.1■■□□□ 1.29
CLN3-262ENST00000637699 SYNPO2Q9UMS6 1093 aa23.1■■□□□ 1.29
CLN3-262ENST00000637699 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.09■■□□□ 1.29
CLN3-262ENST00000637699 CTAGE5O15320 804 aa23.09■■□□□ 1.29
CLN3-262ENST00000637699 TNFAIP2Q03169 654 aa23.09■■□□□ 1.29
CLN3-262ENST00000637699 IKQ13123 557 aaPredicted RBP23.09■■□□□ 1.29
CLN3-262ENST00000637699 NEDD1Q8NHV4 660 aa23.09■■□□□ 1.29
CLN3-262ENST00000637699 PPM1EQ8WY54 764 aa23.09■■□□□ 1.29
CLN3-262ENST00000637699 AGBL1Q96MI9 1066 aa23.09■■□□□ 1.29
CLN3-262ENST00000637699 PBX4Q9BYU1 374 aa23.09■■□□□ 1.29
CLN3-262ENST00000637699 ACAD9Q9H845 621 aa23.09■■□□□ 1.29
CLN3-262ENST00000637699 PRDM6Q9NQX0 595 aa23.09■■□□□ 1.29
CLN3-262ENST00000637699 CYP2C18P33260 490 aa23.08■■□□□ 1.29
CLN3-262ENST00000637699 TFAP4Q01664 338 aa23.08■■□□□ 1.29
CLN3-262ENST00000637699 RASIP1Q5U651 963 aa23.08■■□□□ 1.29
CLN3-262ENST00000637699 FAM133AQ8N9E0 248 aa23.08■■□□□ 1.29
CLN3-262ENST00000637699 SEC62Q99442 399 aaKnown RBP23.08■■□□□ 1.29
CLN3-262ENST00000637699 RNF146Q9NTX7 359 aa23.08■■□□□ 1.29
CLN3-262ENST00000637699 SOWAHBA6NEL2 793 aa23.07■■□□□ 1.28
CLN3-262ENST00000637699 FDX1P10109 184 aa23.07■■□□□ 1.28
CLN3-262ENST00000637699 STAT2P52630 851 aa23.07■■□□□ 1.28
CLN3-262ENST00000637699 PDE4BQ07343 736 aa23.07■■□□□ 1.28
CLN3-262ENST00000637699 PSRC1Q6PGN9 363 aaPredicted RBP23.07■■□□□ 1.28
CLN3-262ENST00000637699 CXCL17Q6UXB2 119 aa23.07■■□□□ 1.28
CLN3-262ENST00000637699 CHURC1Q8WUH1 139 aa23.07■■□□□ 1.28
CLN3-262ENST00000637699 GAS2L1Q99501 681 aaPredicted RBP23.07■■□□□ 1.28
CLN3-262ENST00000637699 NACAP1Q9BZK3 213 aa23.07■■□□□ 1.28
CLN3-262ENST00000637699 PRDM12Q9H4Q4 367 aa23.07■■□□□ 1.28
CLN3-262ENST00000637699 A1CFQ9NQ94 594 aaKnown RBP23.07■■□□□ 1.28
CLN3-262ENST00000637699 MYO9BQ13459 2157 aa23.07■■□□□ 1.28
CLN3-262ENST00000637699 ASTN1O14525 1302 aa23.07■■□□□ 1.28
CLN3-262ENST00000637699 CD4P01730 458 aa23.06■■□□□ 1.28
CLN3-262ENST00000637699 MCCP23508 829 aa23.06■■□□□ 1.28
CLN3-262ENST00000637699 TJAP1Q5JTD0 557 aa23.06■■□□□ 1.28
CLN3-262ENST00000637699 STAG1Q8WVM7 1258 aa23.06■■□□□ 1.28
CLN3-262ENST00000637699 TRERF1Q96PN7 1200 aa23.06■■□□□ 1.28
CLN3-262ENST00000637699 DCTPP1Q9H773 170 aa23.06■■□□□ 1.28
CLN3-262ENST00000637699 DDX49Q9Y6V7 483 aaKnown RBP23.06■■□□□ 1.28
CLN3-262ENST00000637699 CHD9Q3L8U1 2897 aa23.06■■□□□ 1.28
CLN3-262ENST00000637699 ZNF536O15090 1300 aa23.06■■□□□ 1.28
CLN3-262ENST00000637699 PLIN4Q96Q06 1357 aa23.05■■□□□ 1.28
CLN3-262ENST00000637699 ASB14A6NK59 587 aa23.05■■□□□ 1.28
CLN3-262ENST00000637699 SLC3A2P08195 630 aaKnown RBP23.05■■□□□ 1.28
CLN3-262ENST00000637699 ALAS1P13196 640 aa23.05■■□□□ 1.28
CLN3-262ENST00000637699 PTGS1P23219 599 aa23.05■■□□□ 1.28
CLN3-262ENST00000637699 SLC1A4P43007 532 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 94.8 ms