RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 NOVP48745 357 aa21.22■□□□□ 0.99
CLN3-243ENST00000635973 KRT32Q14532 448 aa21.22■□□□□ 0.99
CLN3-243ENST00000635973 CCDC96Q2M329 555 aa21.22■□□□□ 0.99
CLN3-243ENST00000635973 IFIT1BQ5T764 474 aaKnown RBP21.22■□□□□ 0.99
CLN3-243ENST00000635973 DGKHQ86XP1 1220 aa21.22■□□□□ 0.99
CLN3-243ENST00000635973 RIOX2Q8IUF8 465 aa21.22■□□□□ 0.99
CLN3-243ENST00000635973 ENAHQ8N8S7 591 aaPredicted RBP21.22■□□□□ 0.99
CLN3-243ENST00000635973 SLF1Q9BQI6 1058 aa21.22■□□□□ 0.99
CLN3-243ENST00000635973 SENP6Q9GZR1 1112 aaPredicted RBP21.22■□□□□ 0.99
CLN3-243ENST00000635973 MYCNP04198 464 aaPredicted RBP21.21■□□□□ 0.99
CLN3-243ENST00000635973 COL6A1P12109 1028 aa21.21■□□□□ 0.99
CLN3-243ENST00000635973 CYBAP13498 195 aa21.21■□□□□ 0.99
CLN3-243ENST00000635973 MCM5P33992 734 aa21.21■□□□□ 0.99
CLN3-243ENST00000635973 HSPA4P34932 840 aa21.21■□□□□ 0.99
CLN3-243ENST00000635973 IKQ13123 557 aaPredicted RBP21.21■□□□□ 0.99
CLN3-243ENST00000635973 RCSD1Q6JBY9 416 aa21.21■□□□□ 0.99
CLN3-243ENST00000635973 CHST3Q7LGC8 479 aa21.21■□□□□ 0.99
CLN3-243ENST00000635973 MB21D2Q8IYB1 491 aaPredicted RBP21.21■□□□□ 0.99
CLN3-243ENST00000635973 ARRDC4Q8NCT1 418 aa21.21■□□□□ 0.99
CLN3-243ENST00000635973 BMP3P12645 472 aa21.2■□□□□ 0.98
CLN3-243ENST00000635973 SLC4A3P48751 1232 aa21.2■□□□□ 0.98
CLN3-243ENST00000635973 RASEFQ8IZ41 740 aa21.2■□□□□ 0.98
CLN3-243ENST00000635973 PRPF38AQ8NAV1 312 aaKnown RBP21.2■□□□□ 0.98
CLN3-243ENST00000635973 TRPV1Q8NER1 839 aa21.2■□□□□ 0.98
CLN3-243ENST00000635973 GMCL1Q96IK5 515 aa21.2■□□□□ 0.98
CLN3-243ENST00000635973 MAML3Q96JK9 1138 aa21.2■□□□□ 0.98
CLN3-243ENST00000635973 NEK1Q96PY6 1258 aa21.2■□□□□ 0.98
CLN3-243ENST00000635973 DNM1LO00429 736 aa21.19■□□□□ 0.98
CLN3-243ENST00000635973 SEPT4O43236 478 aa21.19■□□□□ 0.98
CLN3-243ENST00000635973 PRC1O43663 620 aa21.19■□□□□ 0.98
CLN3-243ENST00000635973 ZBED4O75132 1171 aa21.19■□□□□ 0.98
CLN3-243ENST00000635973 TMEM67Q5HYA8 995 aa21.19■□□□□ 0.98
CLN3-243ENST00000635973 PNMA1Q8ND90 353 aa21.19■□□□□ 0.98
CLN3-243ENST00000635973 DCAF4Q8WV16 495 aa21.19■□□□□ 0.98
CLN3-243ENST00000635973 TEX13BQ9BXU2 312 aa21.19■□□□□ 0.98
CLN3-243ENST00000635973 USP26Q9BXU7 913 aa21.19■□□□□ 0.98
CLN3-243ENST00000635973 KBTBD13C9JR72 458 aa21.18■□□□□ 0.98
CLN3-243ENST00000635973 PGK2P07205 417 aa21.18■□□□□ 0.98
CLN3-243ENST00000635973 WTAPQ15007 396 aa21.18■□□□□ 0.98
CLN3-243ENST00000635973 LRRC26Q2I0M4 334 aa21.18■□□□□ 0.98
CLN3-243ENST00000635973 ANO1Q5XXA6 986 aa21.18■□□□□ 0.98
CLN3-243ENST00000635973 SNRNP48Q6IEG0 339 aaKnown RBP21.18■□□□□ 0.98
CLN3-243ENST00000635973 ANKS1AQ92625 1134 aa21.18■□□□□ 0.98
CLN3-243ENST00000635973 KIFC2Q96AC6 838 aa21.18■□□□□ 0.98
CLN3-243ENST00000635973 JAKMIP1Q96N16 626 aaKnown RBP21.18■□□□□ 0.98
CLN3-243ENST00000635973 FEM1BQ9UK73 627 aa21.18■□□□□ 0.98
CLN3-243ENST00000635973 ZNF214Q9UL59 606 aaPredicted RBP21.18■□□□□ 0.98
CLN3-243ENST00000635973 TMEM232C9JQI7 657 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 BMP8BP34820 402 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 STAT2P52630 851 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 ANTXR2P58335 489 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 TSGA10IPQ3SY00 556 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 PRAMEF19Q5SWL8 479 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 GJC2Q5T442 439 aaPredicted RBP21.17■□□□□ 0.98
CLN3-243ENST00000635973 KCTD1Q719H9 257 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 RASGRP2Q7LDG7 609 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 CPXCR1Q8N123 301 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 DDX11Q96FC9 970 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 GDF15Q99988 308 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 SNX14Q9Y5W7 946 aa21.17■□□□□ 0.98
CLN3-243ENST00000635973 FRMPD2Q68DX3 1309 aaPredicted RBP21.16■□□□□ 0.98
CLN3-243ENST00000635973 IGHA2P01877 340 aa21.16■□□□□ 0.98
CLN3-243ENST00000635973 HMGB1P09429 215 aaKnown RBP21.16■□□□□ 0.98
CLN3-243ENST00000635973 ATN1P54259 1190 aaPredicted RBP21.16■□□□□ 0.98
CLN3-243ENST00000635973 SEC23AQ15436 765 aa21.16■□□□□ 0.98
CLN3-243ENST00000635973 ADCK5Q3MIX3 580 aa21.16■□□□□ 0.98
CLN3-243ENST00000635973 TMEM87BQ96K49 555 aa21.16■□□□□ 0.98
CLN3-243ENST00000635973 PRKAG2Q9UGJ0 569 aa21.16■□□□□ 0.98
CLN3-243ENST00000635973 DIS3Q9Y2L1 958 aaKnown RBP21.16■□□□□ 0.98
CLN3-243ENST00000635973 PDHBP11177 359 aa21.15■□□□□ 0.98
CLN3-243ENST00000635973 MAGEA10P43363 369 aaPredicted RBP21.15■□□□□ 0.98
CLN3-243ENST00000635973 C8orf34Q49A92 452 aa21.15■□□□□ 0.98
CLN3-243ENST00000635973 NFXL1Q6ZNB6 911 aa21.15■□□□□ 0.98
CLN3-243ENST00000635973 FAM160B2Q86V87 743 aa21.15■□□□□ 0.98
CLN3-243ENST00000635973 REPS2Q8NFH8 660 aa21.15■□□□□ 0.98
CLN3-243ENST00000635973 CHURC1Q8WUH1 139 aa21.15■□□□□ 0.98
CLN3-243ENST00000635973 KCNB2Q92953 911 aa21.15■□□□□ 0.98
CLN3-243ENST00000635973 TINF2Q9BSI4 451 aa21.15■□□□□ 0.98
CLN3-243ENST00000635973 UBE2OQ9C0C9 1292 aaKnown RBP21.15■□□□□ 0.98
CLN3-243ENST00000635973 NRBP1Q9UHY1 535 aa21.15■□□□□ 0.98
CLN3-243ENST00000635973 CNPY2Q9Y2B0 182 aa21.15■□□□□ 0.98
CLN3-243ENST00000635973 SMCHD1A6NHR9 2005 aa21.14■□□□□ 0.98
CLN3-243ENST00000635973 PSMA5P28066 241 aa21.14■□□□□ 0.97
CLN3-243ENST00000635973 FGD1P98174 961 aa21.14■□□□□ 0.97
CLN3-243ENST00000635973 DHX32Q7L7V1 743 aaKnown RBP21.14■□□□□ 0.97
CLN3-243ENST00000635973 LBHD1Q9BQE6 289 aaPredicted RBP21.14■□□□□ 0.97
CLN3-243ENST00000635973 MTA3Q9BTC8 594 aa21.14■□□□□ 0.97
CLN3-243ENST00000635973 LRRC2Q9BYS8 371 aa21.14■□□□□ 0.97
CLN3-243ENST00000635973 GPCPD1Q9NPB8 672 aa21.14■□□□□ 0.97
CLN3-243ENST00000635973 CCDC69A6NI79 296 aa21.13■□□□□ 0.97
CLN3-243ENST00000635973 SOX1O00570 391 aaPredicted RBP21.13■□□□□ 0.97
CLN3-243ENST00000635973 SH2B2O14492 632 aaPredicted RBP21.13■□□□□ 0.97
CLN3-243ENST00000635973 RARBP10826 455 aa21.13■□□□□ 0.97
CLN3-243ENST00000635973 ZNF792Q3KQV3 632 aa21.13■□□□□ 0.97
CLN3-243ENST00000635973 BLOC1S2Q6QNY1 142 aa21.13■□□□□ 0.97
CLN3-243ENST00000635973 CATIPQ7Z7H3 387 aa21.13■□□□□ 0.97
CLN3-243ENST00000635973 IGDCC4Q8TDY8 1250 aa21.13■□□□□ 0.97
CLN3-243ENST00000635973 LY9Q9HBG7 655 aa21.13■□□□□ 0.97
CLN3-243ENST00000635973 WDR19Q8NEZ3 1342 aa21.12■□□□□ 0.97
CLN3-243ENST00000635973 PARP1P09874 1014 aaKnown RBP21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms