RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 PI4K2BQ8TCG2 481 aa28.29■■■□□ 2.12
CPSF1-214ENST00000622776 NAPBQ9H115 298 aa28.29■■■□□ 2.12
CPSF1-214ENST00000622776 TTYH1Q9H313 450 aaPredicted RBP28.29■■■□□ 2.12
CPSF1-214ENST00000622776 SLC3A2P08195 630 aaKnown RBP28.28■■■□□ 2.12
CPSF1-214ENST00000622776 FDX1P10109 184 aa28.28■■■□□ 2.12
CPSF1-214ENST00000622776 TFAP4Q01664 338 aa28.28■■■□□ 2.12
CPSF1-214ENST00000622776 CCDC144BQ3MJ40 725 aa28.28■■■□□ 2.12
CPSF1-214ENST00000622776 FSD1Q9BTV5 496 aa28.28■■■□□ 2.12
CPSF1-214ENST00000622776 TMEM232C9JQI7 657 aa28.27■■■□□ 2.12
CPSF1-214ENST00000622776 ADCY6O43306 1168 aa28.27■■■□□ 2.12
CPSF1-214ENST00000622776 C6orf222P0C671 652 aaPredicted RBP28.27■■■□□ 2.12
CPSF1-214ENST00000622776 IRX5P78411 483 aaPredicted RBP28.27■■■□□ 2.12
CPSF1-214ENST00000622776 PPARAQ07869 468 aa28.27■■■□□ 2.12
CPSF1-214ENST00000622776 ZMYM1Q5SVZ6 1142 aa28.27■■■□□ 2.12
CPSF1-214ENST00000622776 ARMCX2Q7L311 632 aa28.27■■■□□ 2.12
CPSF1-214ENST00000622776 OTUD7AQ8TE49 926 aaPredicted RBP28.27■■■□□ 2.12
CPSF1-214ENST00000622776 GLT1D1Q96MS3 346 aa28.27■■■□□ 2.12
CPSF1-214ENST00000622776 SPC25Q9HBM1 224 aa28.27■■■□□ 2.12
CPSF1-214ENST00000622776 HOMER2Q9NSB8 354 aa28.27■■■□□ 2.12
CPSF1-214ENST00000622776 ISY1Q9ULR0 285 aaKnown RBP28.27■■■□□ 2.12
CPSF1-214ENST00000622776 ELP1O95163 1332 aa28.26■■■□□ 2.11
CPSF1-214ENST00000622776 PCSK9Q8NBP7 692 aaKnown RBP28.26■■■□□ 2.11
CPSF1-214ENST00000622776 COL25A1Q9BXS0 654 aaPredicted RBP28.26■■■□□ 2.11
CPSF1-214ENST00000622776 UPF3AQ9H1J1 476 aaKnown RBP28.26■■■□□ 2.11
CPSF1-214ENST00000622776 PCDHB15Q9Y5E8 787 aa28.26■■■□□ 2.11
CPSF1-214ENST00000622776 STAT2P52630 851 aa28.25■■■□□ 2.11
CPSF1-214ENST00000622776 GJA9P57773 515 aa28.25■■■□□ 2.11
CPSF1-214ENST00000622776 CNTN2Q02246 1040 aa28.25■■■□□ 2.11
CPSF1-214ENST00000622776 CHURC1Q8WUH1 139 aa28.25■■■□□ 2.11
CPSF1-214ENST00000622776 GMCL1Q96IK5 515 aa28.25■■■□□ 2.11
CPSF1-214ENST00000622776 ACAD9Q9H845 621 aa28.25■■■□□ 2.11
CPSF1-214ENST00000622776 TBX21Q9UL17 535 aa28.25■■■□□ 2.11
CPSF1-214ENST00000622776 TIMP1P01033 207 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 ASGR1P07306 291 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 CDK7P50613 346 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 FAM160B2Q86V87 743 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 CCDC144CPQ8IYA2 1237 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 FAM133AQ8N9E0 248 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 MAFAQ8NHW3 353 aaPredicted RBP28.24■■■□□ 2.11
CPSF1-214ENST00000622776 STAG1Q8WVM7 1258 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 MYLIPQ8WY64 445 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 VTI1AQ96AJ9 217 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 KATNBL1Q9H079 304 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 TTC28Q96AY4 2481 aa28.24■■■□□ 2.11
CPSF1-214ENST00000622776 MROH7Q68CQ1 1323 aa28.23■■■□□ 2.11
CPSF1-214ENST00000622776 SLC1A4P43007 532 aa28.23■■■□□ 2.11
CPSF1-214ENST00000622776 IKQ13123 557 aaPredicted RBP28.23■■■□□ 2.11
CPSF1-214ENST00000622776 GNASQ5JWF2 1037 aa28.23■■■□□ 2.11
CPSF1-214ENST00000622776 RNF146Q9NTX7 359 aa28.23■■■□□ 2.11
CPSF1-214ENST00000622776 TMEM265A0A087WTH1 108 aa28.22■■■□□ 2.11
CPSF1-214ENST00000622776 MCCP23508 829 aa28.22■■■□□ 2.11
CPSF1-214ENST00000622776 PPP4R3BQ5MIZ7 849 aa28.22■■■□□ 2.11
CPSF1-214ENST00000622776 CHMP4CQ96CF2 233 aa28.22■■■□□ 2.11
CPSF1-214ENST00000622776 AGBL1Q96MI9 1066 aa28.22■■■□□ 2.11
CPSF1-214ENST00000622776 A1CFQ9NQ94 594 aaKnown RBP28.22■■■□□ 2.11
CPSF1-214ENST00000622776 DDX52Q9Y2R4 599 aaKnown RBP eCLIP28.22■■■□□ 2.11
CPSF1-214ENST00000622776 ZNF536O15090 1300 aa28.21■■■□□ 2.11
CPSF1-214ENST00000622776 MYO9BQ13459 2157 aa28.21■■■□□ 2.11
CPSF1-214ENST00000622776 CDH23Q9H251 3354 aa28.2■■■□□ 2.11
CPSF1-214ENST00000622776 A0A0U1RQG5 324 aaPredicted RBP28.2■■■□□ 2.1
CPSF1-214ENST00000622776 HSFX4A0A1B0GTS1 333 aaPredicted RBP28.2■■■□□ 2.1
CPSF1-214ENST00000622776 HSFX3A0A1B0GWH4 333 aaPredicted RBP28.2■■■□□ 2.1
CPSF1-214ENST00000622776 ARVCFO00192 962 aa28.2■■■□□ 2.1
CPSF1-214ENST00000622776 CTAGE5O15320 804 aa28.2■■■□□ 2.1
CPSF1-214ENST00000622776 FOXP2O15409 715 aa28.2■■■□□ 2.1
CPSF1-214ENST00000622776 PLA2G6O60733 806 aa28.2■■■□□ 2.1
CPSF1-214ENST00000622776 MX1P20591 662 aa28.2■■■□□ 2.1
CPSF1-214ENST00000622776 TKFCQ3LXA3 575 aa28.2■■■□□ 2.1
CPSF1-214ENST00000622776 MFSD5Q6N075 450 aa28.2■■■□□ 2.1
CPSF1-214ENST00000622776 CCDC129Q6ZRS4 1044 aa28.2■■■□□ 2.1
CPSF1-214ENST00000622776 STX8Q9UNK0 236 aa28.2■■■□□ 2.1
CPSF1-214ENST00000622776 PRUNE2Q8WUY3 3088 aa28.2■■■□□ 2.1
CPSF1-214ENST00000622776 SOWAHBA6NEL2 793 aa28.19■■■□□ 2.1
CPSF1-214ENST00000622776 TSPY2A6NKD2 308 aa28.19■■■□□ 2.1
CPSF1-214ENST00000622776 NKX3-2P78367 333 aa28.19■■■□□ 2.1
CPSF1-214ENST00000622776 CTDSPL2Q05D32 466 aa28.19■■■□□ 2.1
CPSF1-214ENST00000622776 RCSD1Q6JBY9 416 aa28.19■■■□□ 2.1
CPSF1-214ENST00000622776 KCTD1Q719H9 257 aa28.19■■■□□ 2.1
CPSF1-214ENST00000622776 TRERF1Q96PN7 1200 aa28.19■■■□□ 2.1
CPSF1-214ENST00000622776 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.19■■■□□ 2.11e-9■□□□□ 9.6
CPSF1-214ENST00000622776 INCENPQ9NQS7 918 aa28.19■■■□□ 2.1
CPSF1-214ENST00000622776 IL17RBQ9NRM6 502 aa28.19■■■□□ 2.1
CPSF1-214ENST00000622776 EYSQ5T1H1 3165 aa28.19■■■□□ 2.1
CPSF1-214ENST00000622776 ASB14A6NK59 587 aa28.18■■■□□ 2.1
CPSF1-214ENST00000622776 ALAS1P13196 640 aa28.18■■■□□ 2.1
CPSF1-214ENST00000622776 FOSL2P15408 326 aa28.18■■■□□ 2.1
CPSF1-214ENST00000622776 TNFAIP2Q03169 654 aa28.18■■■□□ 2.1
CPSF1-214ENST00000622776 C11orf97A0A1B0GVM6 126 aaPredicted RBP28.17■■■□□ 2.1
CPSF1-214ENST00000622776 NMT2O60551 498 aa28.17■■■□□ 2.1
CPSF1-214ENST00000622776 SNAP25P60880 206 aa28.17■■■□□ 2.1
CPSF1-214ENST00000622776 BEX3Q00994 111 aa28.17■■■□□ 2.1
CPSF1-214ENST00000622776 PPIGQ13427 754 aaKnown RBP eCLIP28.17■■■□□ 2.12e-15■■■■■ 47.2
CPSF1-214ENST00000622776 CCDC174Q6PII3 467 aa28.17■■■□□ 2.1
CPSF1-214ENST00000622776 NOL8Q76FK4 1167 aaKnown RBP28.17■■■□□ 2.1
CPSF1-214ENST00000622776 FAM126BQ8IXS8 530 aa28.17■■■□□ 2.1
CPSF1-214ENST00000622776 DNAJB2P25686 324 aa28.16■■■□□ 2.1
CPSF1-214ENST00000622776 C16orf59Q7L2K0 433 aa28.16■■■□□ 2.1
CPSF1-214ENST00000622776 PRR12Q9ULL5 1215 aa28.16■■■□□ 2.1
CPSF1-214ENST00000622776 ASTN1O14525 1302 aa28.16■■■□□ 2.1
CPSF1-214ENST00000622776 SALL3Q9BXA9 1300 aa28.16■■■□□ 2.1
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms