RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 BACH1O14867 736 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 KIAA0754O94854 1291 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 NTSR2O95665 410 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 CYP4A11Q02928 519 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 ABCB5Q2M3G0 1257 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 CLEC4GQ6UXB4 293 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 TMTC3Q6ZXV5 915 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 BUB1O43683 1085 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 TTLL1O95922 423 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 NEFHP12036 1026 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 SPATA1Q5VX52 437 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 GDAP1L1Q96MZ0 367 aa9.95□□□□□ -0.82
PDLIM5-222ENST00000615540 TSGA10IPQ3SY00 556 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 PICK1Q9NRD5 415 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 MROH7-TTC4A0A0A0MT08 1334 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 RAD17O75943 681 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 COPB1P53618 953 aaKnown RBP9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 SHC4Q6S5L8 630 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 SECISBP2LQ93073 1101 aaKnown RBP9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 NAA15Q9BXJ9 866 aaKnown RBP9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 KIAA1024Q9UPX6 916 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 NWD1Q149M9 1564 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 SMIM23A6NLE4 172 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 SEPT7Q16181 437 aaKnown RBP9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 CLEC11AQ9Y240 323 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 PP2D1A8MPX8 630 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 CYP2J2P51589 502 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 ERCC6LQ2NKX8 1250 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 TIGD1Q96MW7 591 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 CSRNP1Q96S65 589 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 ANKRD62A6NC57 917 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 TRIM49BA6NDI0 452 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 HOXA13P31271 388 aaPredicted RBP9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 RDXP35241 583 aaKnown RBP9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 PLA2G4DQ86XP0 818 aa9.94□□□□□ -0.82
PDLIM5-222ENST00000615540 FDPSP14324 419 aaKnown RBP9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 NSMFQ6X4W1 530 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 CNOT6LQ96LI5 555 aaKnown RBP9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 PCDHA12Q9UN75 941 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 PCDHA1Q9Y5I3 950 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 ARHGEF35A5YM69 484 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 PLCG1P19174 1290 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 NFIXQ14938 502 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 TOGARAM2Q6ZUX3 1019 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 FBXO11Q86XK2 927 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 ACRBPQ8NEB7 543 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 OGFRQ9NZT2 677 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 ZNF215Q9UL58 517 aaPredicted RBP9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 KMT5BQ4FZB7 885 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 KCNF1Q9H3M0 494 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 COL5A2P05997 1499 aaPredicted RBP9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 PCP11498 1178 aaKnown RBP9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 IFI16Q16666 785 aaKnown RBP9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 AOC3Q16853 763 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 HS2ST1Q7LGA3 356 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 CCDC50Q8IVM0 306 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 SUPT20HQ8NEM7 779 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 IGDCC4Q8TDY8 1250 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 BCS1LQ9Y276 419 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 PAXIP1Q6ZW49 1069 aaPredicted RBP9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 TMEM47Q9BQJ4 181 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 SH2D4AQ9H788 454 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 HPS5Q9UPZ3 1129 aa9.93□□□□□ -0.82
PDLIM5-222ENST00000615540 SHTN1A0MZ66 631 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 ENC1O14682 589 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 SEC31AO94979 1220 aaKnown RBP9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 ALAS1P13196 640 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 TMTC1Q8IUR5 882 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 GDAQ9Y2T3 454 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 PCDHB13Q9Y5F0 798 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 ARHGAP44Q17R89 818 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 FAM102BQ5T8I3 360 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 ZNF658Q5TYW1 1059 aaPredicted RBP9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 DYDC1Q8WWB3 177 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 NSUN4Q96CB9 384 aaKnown RBP9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 GSTTP1A0A1W2PQM5 241 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 MMP10P09238 476 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 EEF2P13639 858 aaKnown RBP9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 ST3GAL1Q11201 340 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 RNF187Q5TA31 235 aaPredicted RBP9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 UTP14CQ5TAP6 766 aaKnown RBP9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 SFMBT2Q5VUG0 894 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 SRBD1Q8N5C6 995 aaKnown RBP9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 CD209Q9NNX6 404 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 TESPA1A2RU30 521 aaPredicted RBP9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 GAS7O60861 476 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 ADGRA1Q86SQ6 560 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 MYOCDQ8IZQ8 938 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 TRIML1Q8N9V2 468 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 RABEP2Q9H5N1 569 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 SPATA31A5Q5VU36 1347 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 SPATA31A7Q8IWB4 1347 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 TUBB4AP04350 444 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 PFKFB3Q16875 520 aaPredicted RBP9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 C3orf67Q6ZVT6 689 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 NLGN1Q8N2Q7 840 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 KIAA1524Q8TCG1 905 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 CEP95Q96GE4 821 aa9.92□□□□□ -0.82
PDLIM5-222ENST00000615540 SELENOOQ9BVL4 669 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms