RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 TFRCP02786 760 aaKnown RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 HSPD1P10809 573 aaKnown RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 ATP1A3P13637 1013 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 HDLBPQ00341 1268 aaKnown RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 MKRN4PQ13434 485 aaPredicted RBP11.36□□□□□ -0.59
VPS39-214ENST00000614932 DDB1Q16531 1140 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 MSL1Q68DK7 614 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 ARL10Q8N8L6 244 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 TEKT4Q8WW24 435 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 CNKSR1Q969H4 720 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 ARPC5LQ9BPX5 153 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 SHANK3Q9BYB0 1731 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 FANCLQ9NW38 375 aa11.36□□□□□ -0.59
VPS39-214ENST00000614932 UBN2Q6ZU65 1347 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 LRRC10BA6NIK2 292 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 DNAJC8O75937 253 aaPredicted RBP11.35□□□□□ -0.59
VPS39-214ENST00000614932 CNGA1P29973 690 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 SCTRP47872 440 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 GUCY1B3Q02153 619 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 PTGISQ16647 500 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 FAM182BQ5T319 152 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 STK11IPQ8N1F8 1099 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 SDR16C5Q8N3Y7 309 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 NAPGQ99747 312 aaPredicted RBP11.35□□□□□ -0.59
VPS39-214ENST00000614932 SDF4Q9BRK5 362 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 OSBPL7Q9BZF2 842 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 PUS7LQ9H0K6 701 aaKnown RBP11.35□□□□□ -0.59
VPS39-214ENST00000614932 INCENPQ9NQS7 918 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 WDR35Q9P2L0 1181 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 ZNF510Q9Y2H8 683 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 ABCC6O95255 1503 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 LAMB4A4D0S4 1761 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 ABCA3Q99758 1704 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 STXBP3O00186 592 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 RNF113AO15541 343 aaKnown RBP11.35□□□□□ -0.59
VPS39-214ENST00000614932 ZNF189O75820 626 aaPredicted RBP11.35□□□□□ -0.59
VPS39-214ENST00000614932 FAM107AO95990 144 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 EIF4BP23588 611 aaKnown RBP11.35□□□□□ -0.59
VPS39-214ENST00000614932 TMEM62Q0P6H9 643 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 TBX2Q13207 712 aaPredicted RBP11.35□□□□□ -0.59
VPS39-214ENST00000614932 RIPK1Q13546 671 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 ENOX2Q16206 610 aaKnown RBP11.35□□□□□ -0.59
VPS39-214ENST00000614932 Q4G0T1 1027 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 LACTB2Q53H82 288 aaPredicted RBP11.35□□□□□ -0.59
VPS39-214ENST00000614932 PDILTQ8N807 584 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 OSBPL1AQ9BXW6 950 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 SEC31BQ9NQW1 1179 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 KIAA1468Q9P260 1216 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 PHF24Q9UPV7 400 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 MAPK8IP1Q9UQF2 711 aa11.35□□□□□ -0.59
VPS39-214ENST00000614932 LRRD1A4D1F6 860 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 SRRM3A6NNA2 597 aaPredicted RBP11.34□□□□□ -0.59
VPS39-214ENST00000614932 PPP1R37O75864 691 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 IDH1O75874 414 aaKnown RBP11.34□□□□□ -0.59
VPS39-214ENST00000614932 CTSWP56202 376 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 NLRP12P59046 1061 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 RESTQ13127 1097 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 TEX9Q8N6V9 391 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 MTRQ99707 1265 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 SPATA7Q9P0W8 599 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 RCOR1Q9UKL0 485 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 DENND2AQ9ULE3 1009 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 ALDH3A1P30838 453 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 MXRA7P84157 204 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 ZMYM1Q5SVZ6 1142 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 DPY19L2Q6NUT2 758 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 KDM7AQ6ZMT4 941 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 SLC35F6Q8N357 371 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 TC2NQ8N9U0 490 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 FSIP1Q8NA03 581 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 ATRIPQ8WXE1 791 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 UNC45AQ9H3U1 944 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 ZWILCHQ9H900 591 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 TMOD4Q9NZQ9 345 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 IQSEC3Q9UPP2 1182 aaPredicted RBP11.34□□□□□ -0.59
VPS39-214ENST00000614932 BCL9O00512 1426 aa11.34□□□□□ -0.59
VPS39-214ENST00000614932 TMEM232C9JQI7 657 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 E7EWF7 191 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 MCAMP43121 646 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 ATP1A2P50993 1020 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 SUSD4Q5VX71 490 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 USPL1Q5W0Q7 1092 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 CCNI2Q6ZMN8 369 aaPredicted RBP11.33□□□□□ -0.6
VPS39-214ENST00000614932 BICDL1Q6ZP65 573 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 MARCH10Q8NA82 808 aaPredicted RBP11.33□□□□□ -0.6
VPS39-214ENST00000614932 L3MBTL3Q96JM7 780 aaPredicted RBP11.33□□□□□ -0.6
VPS39-214ENST00000614932 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.33□□□□□ -0.6
VPS39-214ENST00000614932 SENP2Q9HC62 589 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 PCMTD2Q9NV79 361 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 HMG20BQ9P0W2 317 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 C2CD2Q9Y426 696 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 TJP1Q07157 1748 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 DIAPH2O60879 1101 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 E2F6O75461 281 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 NPTXRO95502 500 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 ABL2P42684 1182 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 GNAQP50148 359 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 SPRED3Q2MJR0 410 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 TTMPQ5BVD1 217 aa11.33□□□□□ -0.6
VPS39-214ENST00000614932 CCDC24Q8N4L8 307 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms