RNA–Protein interactions for RNA: ENST00000614678.1

CPNE3-208, Transcript of copine 3, humanhuman

TSL 1 (best)

Gene CPNE3, Length 4,201 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-208ENST00000614678 ADGRF4Q8IZF3 695 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 GMCL1Q96IK5 515 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 MAML3Q96JK9 1138 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 CWC22Q9HCG8 908 aaKnown RBP6.7□□□□□ -1.34
CPNE3-208ENST00000614678 A1CFQ9NQ94 594 aaKnown RBP6.7□□□□□ -1.34
CPNE3-208ENST00000614678 COL20A1Q9P218 1284 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 MAD2L2Q9UI95 211 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 MYH6P13533 1939 aa6.7□□□□□ -1.34
CPNE3-208ENST00000614678 MYADML2A6NDP7 307 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 HIP1O00291 1037 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 OPLAHO14841 1288 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 IFIT3O14879 490 aaKnown RBP6.69□□□□□ -1.34
CPNE3-208ENST00000614678 IGHA2P01877 340 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 SNHG28P0DPA3 235 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 MAPK4P31152 587 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 MLLT1Q03111 559 aaPredicted RBP6.69□□□□□ -1.34
CPNE3-208ENST00000614678 HOMER1Q86YM7 354 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 PAWRQ96IZ0 340 aaKnown RBP6.69□□□□□ -1.34
CPNE3-208ENST00000614678 XRN2Q9H0D6 950 aaKnown RBP eCLIP6.69□□□□□ -1.34
CPNE3-208ENST00000614678 LY9Q9HBG7 655 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 PAK6Q9NQU5 681 aaPredicted RBP6.69□□□□□ -1.34
CPNE3-208ENST00000614678 BRPF3Q9ULD4 1205 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 SOWAHBA6NEL2 793 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 SORBS3O60504 671 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 SNAI1O95863 264 aaPredicted RBP6.69□□□□□ -1.34
CPNE3-208ENST00000614678 RGS19P49795 217 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 IRF5Q13568 498 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 MAP3K21Q5TCX8 1036 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 NSMFQ6X4W1 530 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 RIOX2Q8IUF8 465 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 NUP133Q8WUM0 1156 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 TRERF1Q96PN7 1200 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 MMP19Q99542 508 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 SH2D4AQ9H788 454 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 TCP11L1Q9NUJ3 509 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 CHD9Q3L8U1 2897 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 PRC1O43663 620 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 PGK1P00558 417 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 UBXN2AP68543 259 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 TROAPQ12815 778 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 IFIT1BQ5T764 474 aaKnown RBP6.69□□□□□ -1.34
CPNE3-208ENST00000614678 TEX13BQ9BXU2 312 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 BCAS3Q9H6U6 928 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 JMJD4Q9H9V9 463 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 ZNF287Q9HBT7 754 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 RNF146Q9NTX7 359 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 TELO2Q9Y4R8 837 aa6.69□□□□□ -1.34
CPNE3-208ENST00000614678 PFASO15067 1338 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 RAD50Q92878 1312 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 CDC45O75419 566 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 HMGCRP04035 888 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 HOXD10P28358 340 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 ZNF792Q3KQV3 632 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 SYDE2Q5VT97 1194 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 SLAIN1Q8ND83 568 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 CLEC4DQ8WXI8 215 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 FERMT2Q96AC1 680 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 APBA2Q99767 749 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 UPF3BQ9BZI7 483 aaKnown RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 FEM1BQ9UK73 627 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 IVNS1ABPQ9Y6Y0 642 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 SGPL1O95470 568 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 FCER1AP12319 257 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 ZKSCAN1P17029 563 aaPredicted RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 GJA8P48165 433 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 ATN1P54259 1190 aaPredicted RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 MFAP1P55081 439 aaKnown RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 BAATQ14032 418 aaPredicted RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 TMEM67Q5HYA8 995 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 PXYLP1Q8TE99 480 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 UBAC1Q9BSL1 405 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 KAT14Q9H8E8 782 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 CCPG1Q9ULG6 757 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 SNX14Q9Y5W7 946 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 U3KPZ7 1027 aaPredicted RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 TFRCP02786 760 aaKnown RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 HOXA13P31271 388 aaPredicted RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 RGS2P41220 211 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 QRICH1Q2TAL8 776 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 UBE2Q1Q7Z7E8 422 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 ANKRD35Q8N283 1001 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 RUFY2Q8WXA3 655 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 PIGSQ96S52 555 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 TMEM106CQ9BVX2 250 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 RANBP17Q9H2T7 1088 aaKnown RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 DNAJC25-GNG10A0A024R161 153 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 SLC15A5A6NIM6 579 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 GJB1P08034 283 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 CYBAP13498 195 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 SYN1P17600 705 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 CALML3P27482 149 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 CDC37Q16543 378 aaPredicted RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 OLFML2BQ68BL8 750 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 IQCA1Q86XH1 822 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 DGKHQ86XP1 1220 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 NCOA7Q8NI08 942 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 UIMC1Q96RL1 719 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 RNF41Q9H4P4 317 aaPredicted RBP6.68□□□□□ -1.34
CPNE3-208ENST00000614678 CTNNA3Q9UI47 895 aa6.68□□□□□ -1.34
CPNE3-208ENST00000614678 FRMPD3Q5JV73 1810 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms