RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 CCDC174Q6PII3 467 aa21.17■□□□□ 0.98
SHKBP1-227ENST00000602011 STK11IPQ8N1F8 1099 aa21.17■□□□□ 0.98
SHKBP1-227ENST00000602011 GMCL1Q96IK5 515 aa21.17■□□□□ 0.98
SHKBP1-227ENST00000602011 PLIN4Q96Q06 1357 aa21.17■□□□□ 0.98
SHKBP1-227ENST00000602011 M0R2C6 588 aa21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 PQBP1O60828 265 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 STAT2P52630 851 aa21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 TFAP4Q01664 338 aa21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 ZMYM1Q5SVZ6 1142 aa21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 STAG1Q8WVM7 1258 aa21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 FSD1Q9BTV5 496 aa21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 SEZ6LQ9BYH1 1024 aa21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 RAVER2Q9HCJ3 691 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 ZHX1Q9UKY1 873 aaPredicted RBP21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 SPTBN5Q9NRC6 3674 aaKnown RBP21.16■□□□□ 0.98
SHKBP1-227ENST00000602011 PRDM1O75626 825 aa21.15■□□□□ 0.98
SHKBP1-227ENST00000602011 NKX3-2P78367 333 aa21.15■□□□□ 0.98
SHKBP1-227ENST00000602011 PPARAQ07869 468 aa21.15■□□□□ 0.98
SHKBP1-227ENST00000602011 KCNA10Q16322 511 aa21.15■□□□□ 0.98
SHKBP1-227ENST00000602011 CCSAPQ6IQ19 270 aaPredicted RBP21.15■□□□□ 0.98
SHKBP1-227ENST00000602011 PI4K2BQ8TCG2 481 aa21.15■□□□□ 0.98
SHKBP1-227ENST00000602011 RNPC3Q96LT9 517 aaKnown RBP21.15■□□□□ 0.98
SHKBP1-227ENST00000602011 ACAD9Q9H845 621 aa21.15■□□□□ 0.98
SHKBP1-227ENST00000602011 GREB1LQ9C091 1923 aaPredicted RBP21.14■□□□□ 0.98
SHKBP1-227ENST00000602011 PLXNA1Q9UIW2 1896 aa21.14■□□□□ 0.97
SHKBP1-227ENST00000602011 SYNRGQ9UMZ2 1314 aa21.14■□□□□ 0.97
SHKBP1-227ENST00000602011 ASB14A6NK59 587 aa21.14■□□□□ 0.97
SHKBP1-227ENST00000602011 SLC1A4P43007 532 aa21.14■□□□□ 0.97
SHKBP1-227ENST00000602011 SLC4A3P48751 1232 aa21.14■□□□□ 0.97
SHKBP1-227ENST00000602011 GJA9P57773 515 aa21.14■□□□□ 0.97
SHKBP1-227ENST00000602011 IRX5P78411 483 aaPredicted RBP21.14■□□□□ 0.97
SHKBP1-227ENST00000602011 FPGSQ05932 587 aa21.14■□□□□ 0.97
SHKBP1-227ENST00000602011 UPF3AQ9H1J1 476 aaKnown RBP21.14■□□□□ 0.97
SHKBP1-227ENST00000602011 TMEM232C9JQI7 657 aa21.13■□□□□ 0.97
SHKBP1-227ENST00000602011 FOSL2P15408 326 aa21.13■□□□□ 0.97
SHKBP1-227ENST00000602011 FAAP100Q0VG06 881 aa21.13■□□□□ 0.97
SHKBP1-227ENST00000602011 TSHZ3Q63HK5 1081 aa21.13■□□□□ 0.97
SHKBP1-227ENST00000602011 TIMP1P01033 207 aa21.12■□□□□ 0.97
SHKBP1-227ENST00000602011 MX1P20591 662 aa21.12■□□□□ 0.97
SHKBP1-227ENST00000602011 CDK7P50613 346 aa21.12■□□□□ 0.97
SHKBP1-227ENST00000602011 CCDC144BQ3MJ40 725 aa21.12■□□□□ 0.97
SHKBP1-227ENST00000602011 RCSD1Q6JBY9 416 aa21.12■□□□□ 0.97
SHKBP1-227ENST00000602011 ARMCX2Q7L311 632 aa21.12■□□□□ 0.97
SHKBP1-227ENST00000602011 LRRC47Q8N1G4 583 aaKnown RBP21.12■□□□□ 0.97
SHKBP1-227ENST00000602011 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 TSPY2A6NKD2 308 aa21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 CABYRO75952 493 aa21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 C6orf222P0C671 652 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 IKQ13123 557 aaPredicted RBP21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 GNASQ5JWF2 1037 aa21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 CCDC129Q6ZRS4 1044 aa21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 FAM133AQ8N9E0 248 aa21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 VTI1AQ96AJ9 217 aa21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 ANAPC4Q9UJX5 808 aa21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 PNMA2Q9UL42 364 aa21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 PCDHB15Q9Y5E8 787 aa21.11■□□□□ 0.97
SHKBP1-227ENST00000602011 A0A0U1RQG5 324 aaPredicted RBP21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 MYADML2A6NDP7 307 aa21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 TLR3O15455 904 aaKnown RBP21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 ASGR1P07306 291 aa21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 ALX1Q15699 326 aa21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 MFSD5Q6N075 450 aa21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 CCDC144CPQ8IYA2 1237 aa21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 EVI5LQ96CN4 794 aa21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 SEC62Q99442 399 aaKnown RBP21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 STX8Q9UNK0 236 aa21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 Q9Y3F1 56 aa21.1■□□□□ 0.97
SHKBP1-227ENST00000602011 LOC102724159A0A0B4J2E5 919 aa21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 ARVCFO00192 962 aa21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 ZEB2O60315 1214 aa21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 MCCP23508 829 aa21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 PPIGQ13427 754 aaKnown RBP eCLIP21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 GRIN2CQ14957 1233 aa21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 PWP2Q15269 919 aaKnown RBP21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 USP38Q8NB14 1042 aa21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 HELLSQ9NRZ9 838 aa21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 RNF146Q9NTX7 359 aa21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 TBX21Q9UL17 535 aa21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 ISY1Q9ULR0 285 aaKnown RBP21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 DDX52Q9Y2R4 599 aaKnown RBP eCLIP21.09■□□□□ 0.97
SHKBP1-227ENST00000602011 NOVP48745 357 aa21.08■□□□□ 0.97
SHKBP1-227ENST00000602011 TNFAIP2Q03169 654 aa21.08■□□□□ 0.97
SHKBP1-227ENST00000602011 IQSEC1Q6DN90 963 aa21.08■□□□□ 0.97
SHKBP1-227ENST00000602011 TMEM199Q8N511 208 aa21.08■□□□□ 0.97
SHKBP1-227ENST00000602011 FGD4Q96M96 766 aa21.08■□□□□ 0.97
SHKBP1-227ENST00000602011 TRERF1Q96PN7 1200 aa21.08■□□□□ 0.97
SHKBP1-227ENST00000602011 A1CFQ9NQ94 594 aaKnown RBP21.08■□□□□ 0.97
SHKBP1-227ENST00000602011 TTC28Q96AY4 2481 aa21.07■□□□□ 0.96
SHKBP1-227ENST00000602011 ADCY6O43306 1168 aa21.07■□□□□ 0.96
SHKBP1-227ENST00000602011 ORC4O43929 436 aa21.07■□□□□ 0.96
SHKBP1-227ENST00000602011 FGRP09769 529 aa21.07■□□□□ 0.96
SHKBP1-227ENST00000602011 DCAF4Q8WV16 495 aa21.07■□□□□ 0.96
SHKBP1-227ENST00000602011 KATNBL1Q9H079 304 aa21.07■□□□□ 0.96
SHKBP1-227ENST00000602011 AP5M1Q9H0R1 490 aa21.07■□□□□ 0.96
SHKBP1-227ENST00000602011 HOMER2Q9NSB8 354 aa21.07■□□□□ 0.96
SHKBP1-227ENST00000602011 ZNF536O15090 1300 aa21.06■□□□□ 0.96
SHKBP1-227ENST00000602011 PCP11498 1178 aaKnown RBP21.06■□□□□ 0.96
SHKBP1-227ENST00000602011 DNAJB2P25686 324 aa21.06■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms