RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 PLXNB2O15031 1838 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 ZNFX1Q9P2E3 1918 aaKnown RBP11.67□□□□□ -0.54
UPF1-213ENST00000601981 GOLGA8AA7E2F4 631 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 GOLGA8BA8MQT2 603 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 KLRF2D3W0D1 207 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 GNRH1P01148 92 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 GOLGA8HP0CJ92 632 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 MAPK4P31152 587 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 METAP2P50579 478 aaKnown RBP eCLIP11.67□□□□□ -0.54
UPF1-213ENST00000601981 FCGRTP55899 365 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 TRAF1Q13077 416 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 PKP1Q13835 747 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 NECAB1Q8N987 351 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 ZNF274Q96GC6 653 aaPredicted RBP11.67□□□□□ -0.54
UPF1-213ENST00000601981 ABHD8Q96I13 439 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 TEX13BQ9BXU2 312 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 SENP2Q9HC62 589 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 GPHNQ9NQX3 736 aaPredicted RBP11.67□□□□□ -0.54
UPF1-213ENST00000601981 PRR12Q9ULL5 1215 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 ADAMTS5Q9UNA0 930 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 ZDHHC9Q9Y397 364 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 DOCK3Q8IZD9 2030 aa11.67□□□□□ -0.54
UPF1-213ENST00000601981 PALM3A6NDB9 673 aaPredicted RBP11.66□□□□□ -0.54
UPF1-213ENST00000601981 SLC25A27O95847 323 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 HOXD10P28358 340 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 SMARCA1P28370 1054 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 GJB2P29033 226 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 SLC16A2P36021 539 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 LACTBP83111 547 aaPredicted RBP11.66□□□□□ -0.54
UPF1-213ENST00000601981 APOBRQ0VD83 1088 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 RTN1Q16799 776 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 WDR78Q5VTH9 848 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 CPLX2Q6PUV4 134 aaKnown RBP11.66□□□□□ -0.54
UPF1-213ENST00000601981 FANCBQ8NB91 859 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 ZNF296Q8WUU4 475 aaPredicted RBP11.66□□□□□ -0.54
UPF1-213ENST00000601981 COA7Q96BR5 231 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 LLPHQ9BRT6 129 aaKnown RBP11.66□□□□□ -0.54
UPF1-213ENST00000601981 MYL10Q9BUA6 226 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 SPATC1LQ9H0A9 340 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 R3HDMLQ9H3Y0 253 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 SLC38A10Q9HBR0 1119 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 RBPJLQ9UBG7 517 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 MAD2L2Q9UI95 211 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 IVNS1ABPQ9Y6Y0 642 aa11.66□□□□□ -0.54
UPF1-213ENST00000601981 RBBP6Q7Z6E9 1792 aaKnown RBP11.66□□□□□ -0.54
UPF1-213ENST00000601981 GOLGA6L22H0YM25 854 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 TNPO2O14787 897 aaKnown RBP11.65□□□□□ -0.54
UPF1-213ENST00000601981 ATP2A1O14983 1001 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 BAG4O95429 457 aaKnown RBP11.65□□□□□ -0.54
UPF1-213ENST00000601981 FMNL1O95466 1100 aaPredicted RBP11.65□□□□□ -0.54
UPF1-213ENST00000601981 PDCP20941 246 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 STAT3P40763 770 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 TKFCQ3LXA3 575 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 SNRNP48Q6IEG0 339 aaKnown RBP11.65□□□□□ -0.54
UPF1-213ENST00000601981 TTBK2Q6IQ55 1244 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 RASGRP2Q7LDG7 609 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 CCDC144CPQ8IYA2 1237 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 CPXCR1Q8N123 301 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 SHCBP1Q8NEM2 672 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 UBA5Q9GZZ9 404 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 RANBP17Q9H2T7 1088 aaKnown RBP11.65□□□□□ -0.54
UPF1-213ENST00000601981 MROH8Q9H579 483 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 TXNRD2Q9NNW7 524 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 BTBD7Q9P203 1132 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 SEC63Q9UGP8 760 aaKnown RBP11.65□□□□□ -0.54
UPF1-213ENST00000601981 FBXO40Q9UH90 709 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 BRPF3Q9ULD4 1205 aa11.65□□□□□ -0.54
UPF1-213ENST00000601981 PLXNA1Q9UIW2 1896 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 CPLX1O14810 134 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 STX6O43752 255 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 ICAM1P05362 532 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 RXRAP19793 462 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 SYT1P21579 422 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 PDIA3P30101 505 aaKnown RBP11.64□□□□□ -0.55
UPF1-213ENST00000601981 PSMC4P43686 418 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 PRMT2P55345 433 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 HMGN5P82970 282 aaKnown RBP11.64□□□□□ -0.55
UPF1-213ENST00000601981 SCRN1Q12765 414 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 STK3Q13188 491 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 TMEM132BQ14DG7 1078 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 CDC37Q16543 378 aaPredicted RBP11.64□□□□□ -0.55
UPF1-213ENST00000601981 CCDC174Q6PII3 467 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 NCAPG2Q86XI2 1143 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 RIOX2Q8IUF8 465 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 ADGRF4Q8IZF3 695 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 STAG2Q8N3U4 1231 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 SMARCC2Q8TAQ2 1214 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 CD99L2Q8TCZ2 262 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 RRP36Q96EU6 259 aaKnown RBP11.64□□□□□ -0.55
UPF1-213ENST00000601981 SPZ1Q9BXG8 430 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 MOV10L1Q9BXT6 1211 aaKnown RBP11.64□□□□□ -0.55
UPF1-213ENST00000601981 EFCC1Q9HA90 598 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 VAT1LQ9HCJ6 419 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 RBM27Q9P2N5 1060 aaKnown RBP11.64□□□□□ -0.55
UPF1-213ENST00000601981 ZNF214Q9UL59 606 aaPredicted RBP11.64□□□□□ -0.55
UPF1-213ENST00000601981 CCPG1Q9ULG6 757 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 NID2Q14112 1375 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 SMCHD1A6NHR9 2005 aa11.64□□□□□ -0.55
UPF1-213ENST00000601981 ZSWIM8A7E2V4 1837 aa11.63□□□□□ -0.55
UPF1-213ENST00000601981 ZNF236Q9UL36 1845 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms