RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	ZBED4	O75132	1171 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	ICAM1	P05362	532 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	NEFL	P07196	543 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	CENPB	P07199	599 aa	Predicted RBP	10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	FCER1A	P12319	257 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	ZKSCAN1	P17029	563 aa	Predicted RBP	10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	TROAP	Q12815	778 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	SLC35G1	Q2M3R5	365 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	TKFC	Q3LXA3	575 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	WDR78	Q5VTH9	848 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	NCAPG2	Q86XI2	1143 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	MSL3	Q8N5Y2	521 aa	Known RBP	10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	FAM133A	Q8N9E0	248 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	DEFB118	Q96PH6	123 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	MAF1	Q9H063	256 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	SENP2	Q9HC62	589 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	RAVER2	Q9HCJ3	691 aa	Known RBP	10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	HMX1	Q9NP08	348 aa	Predicted RBP	10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	NRBP1	Q9UHY1	535 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	ASTN1	O14525	1302 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	WDR19	Q8NEZ3	1342 aa		10.32	□□□□□ -0.76
SSBP4-208	ENST00000600628	PALM3	A6NDB9	673 aa	Predicted RBP	10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	EPB41L2	O43491	1005 aa	Known RBP	10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	TFRC	P02786	760 aa	Known RBP	10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	PLS1	Q14651	629 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	ASPRV1	Q53RT3	343 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	SYDE2	Q5VT97	1194 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	PRPF38B	Q5VTL8	546 aa	Known RBP	10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	CREB3L3	Q68CJ9	461 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	SAMD1	Q6SPF0	538 aa	Predicted RBP	10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	RASEF	Q8IZ41	740 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	ANKLE1	Q8NAG6	615 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	NCOA7	Q8NI08	942 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	AGBL1	Q96MI9	1066 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	MAP3K14	Q99558	947 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	KATNBL1	Q9H079	304 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	FBXO40	Q9UH90	709 aa		10.31	□□□□□ -0.76
SSBP4-208	ENST00000600628	SZT2	Q5T011	3432 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	SNAI1	O95863	264 aa	Predicted RBP	10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	PGK2	P07205	417 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	COL6A1	P12109	1028 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	CCND3	P30281	292 aa	Predicted RBP	10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	CYP2C19	P33261	490 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	SLC16A2	P36021	539 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	LIFR	P42702	1097 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	EXOSC10	Q01780	885 aa	Known RBP	10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	GHRHR	Q02643	423 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	DPP9	Q86TI2	863 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	MORC4	Q8TE76	937 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	CLEC4D	Q8WXI8	215 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	MMP19	Q99542	508 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	TINF2	Q9BSI4	451 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	LY9	Q9HBG7	655 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	A1CF	Q9NQ94	594 aa	Known RBP	10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	MAD2L2	Q9UI95	211 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	SYNGAP1	Q96PV0	1343 aa		10.3	□□□□□ -0.76
SSBP4-208	ENST00000600628	ZNF865	P0CJ78	1059 aa	Predicted RBP	10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	TRDN	Q13061	729 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	KCTD2	Q14681	263 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	GRM4	Q14833	912 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	MUM1L1	Q5H9M0	696 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	IFIT1B	Q5T764	474 aa	Known RBP	10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	MFSD14C	Q5VZR4	134 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	KIAA1211	Q6ZU35	1233 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	SGMS1	Q86VZ5	419 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	CPXCR1	Q8N123	301 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	STAG2	Q8N3U4	1231 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	FBXL16	Q8N461	479 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	RGS22	Q8NE09	1264 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	UBAC1	Q9BSL1	405 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	RIOX1	Q9H6W3	641 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	ACAD9	Q9H845	621 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	JMJD4	Q9H9V9	463 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	ANO2	Q9NQ90	1003 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	SLC5A4	Q9NY91	659 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	CYP39A1	Q9NYL5	469 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	PNMA2	Q9UL42	364 aa		10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	FRMPD2	Q68DX3	1309 aa	Predicted RBP	10.29	□□□□□ -0.76
SSBP4-208	ENST00000600628	LOC102724159	A0A0B4J2E5	919 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	SOWAHB	A6NEL2	793 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	OPLAH	O14841	1288 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	SEPT4	O43236	478 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	CYTH3	O43739	400 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	FARP2	O94887	1054 aa	Predicted RBP	10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	HSPA4	P34932	840 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	SNAP25	P60880	206 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	NKX3-2	P78367	333 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	PWP2	Q15269	919 aa	Known RBP	10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	CCDC96	Q2M329	555 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	ADGRF4	Q8IZF3	695 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	TMEM87B	Q96K49	555 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	TRERF1	Q96PN7	1200 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	AGXT2	Q9BYV1	514 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	CPVL	Q9H3G5	476 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	KAT14	Q9H8E8	782 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	GPCPD1	Q9NPB8	672 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	GPHN	Q9NQX3	736 aa	Predicted RBP	10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	RNF146	Q9NTX7	359 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	PFAS	O15067	1338 aa		10.28	□□□□□ -0.76
SSBP4-208	ENST00000600628	NFIB	O00712	420 aa		10.27	□□□□□ -0.77

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