RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 FRMPD2Q68DX3 1309 aaPredicted RBP18.93■□□□□ 0.62
TRIM28-213ENST00000598355 CYBAP13498 195 aa18.92■□□□□ 0.62
TRIM28-213ENST00000598355 IKQ13123 557 aaPredicted RBP18.92■□□□□ 0.62
TRIM28-213ENST00000598355 KCTD2Q14681 263 aa18.92■□□□□ 0.62
TRIM28-213ENST00000598355 CREB3L3Q68CJ9 461 aa18.92■□□□□ 0.62
TRIM28-213ENST00000598355 CASC1Q6TDU7 716 aa18.92■□□□□ 0.62
TRIM28-213ENST00000598355 RALYLQ86SE5 291 aaKnown RBP18.92■□□□□ 0.62
TRIM28-213ENST00000598355 DPP9Q86TI2 863 aa18.92■□□□□ 0.62
TRIM28-213ENST00000598355 MTA3Q9BTC8 594 aa18.92■□□□□ 0.62
TRIM28-213ENST00000598355 KAT14Q9H8E8 782 aa18.92■□□□□ 0.62
TRIM28-213ENST00000598355 SLC5A4Q9NY91 659 aa18.92■□□□□ 0.62
TRIM28-213ENST00000598355 FBXO40Q9UH90 709 aa18.92■□□□□ 0.62
TRIM28-213ENST00000598355 MTMR7Q9Y216 660 aa18.92■□□□□ 0.62
TRIM28-213ENST00000598355 ICAM1P05362 532 aa18.91■□□□□ 0.62
TRIM28-213ENST00000598355 SLC16A2P36021 539 aa18.91■□□□□ 0.62
TRIM28-213ENST00000598355 TKFCQ3LXA3 575 aa18.91■□□□□ 0.62
TRIM28-213ENST00000598355 ASPRV1Q53RT3 343 aa18.91■□□□□ 0.62
TRIM28-213ENST00000598355 IFIT1BQ5T764 474 aaKnown RBP18.91■□□□□ 0.62
TRIM28-213ENST00000598355 MFSD14CQ5VZR4 134 aa18.91■□□□□ 0.62
TRIM28-213ENST00000598355 CHMP4CQ96CF2 233 aa18.91■□□□□ 0.62
TRIM28-213ENST00000598355 DEFB118Q96PH6 123 aa18.91■□□□□ 0.62
TRIM28-213ENST00000598355 ISY1Q9ULR0 285 aaKnown RBP18.91■□□□□ 0.62
TRIM28-213ENST00000598355 WDR19Q8NEZ3 1342 aa18.91■□□□□ 0.62
TRIM28-213ENST00000598355 COL9A3Q14050 684 aaPredicted RBP18.9■□□□□ 0.62
TRIM28-213ENST00000598355 FGD4Q96M96 766 aa18.9■□□□□ 0.62
TRIM28-213ENST00000598355 AGBL1Q96MI9 1066 aa18.9■□□□□ 0.62
TRIM28-213ENST00000598355 ACAD9Q9H845 621 aa18.9■□□□□ 0.62
TRIM28-213ENST00000598355 GPCPD1Q9NPB8 672 aa18.9■□□□□ 0.62
TRIM28-213ENST00000598355 CTDP1Q9Y5B0 961 aaPredicted RBP18.9■□□□□ 0.62
TRIM28-213ENST00000598355 BAZ2BQ9UIF8 2168 aaKnown RBP18.9■□□□□ 0.62
TRIM28-213ENST00000598355 PGK2P07205 417 aa18.89■□□□□ 0.61
TRIM28-213ENST00000598355 CCND3P30281 292 aaPredicted RBP18.89■□□□□ 0.61
TRIM28-213ENST00000598355 CYP2C19P33261 490 aa18.89■□□□□ 0.61
TRIM28-213ENST00000598355 TSGA10IPQ3SY00 556 aa18.89■□□□□ 0.61
TRIM28-213ENST00000598355 ZNF467Q7Z7K2 595 aaPredicted RBP18.89■□□□□ 0.61
TRIM28-213ENST00000598355 TRPV1Q8NER1 839 aa18.89■□□□□ 0.61
TRIM28-213ENST00000598355 IGDCC4Q8TDY8 1250 aa18.89■□□□□ 0.61
TRIM28-213ENST00000598355 RNF146Q9NTX7 359 aa18.89■□□□□ 0.61
TRIM28-213ENST00000598355 OGDHLQ9ULD0 1010 aa18.89■□□□□ 0.61
TRIM28-213ENST00000598355 SNAP25P60880 206 aa18.88■□□□□ 0.61
TRIM28-213ENST00000598355 LHX8Q68G74 356 aa18.88■□□□□ 0.61
TRIM28-213ENST00000598355 MAMDC4Q6UXC1 1216 aa18.88■□□□□ 0.61
TRIM28-213ENST00000598355 MSL3Q8N5Y2 521 aaKnown RBP18.88■□□□□ 0.61
TRIM28-213ENST00000598355 ANKLE1Q8NAG6 615 aa18.88■□□□□ 0.61
TRIM28-213ENST00000598355 SENP2Q9HC62 589 aa18.88■□□□□ 0.61
TRIM28-213ENST00000598355 A1CFQ9NQ94 594 aaKnown RBP18.88■□□□□ 0.61
TRIM28-213ENST00000598355 NRBP1Q9UHY1 535 aa18.88■□□□□ 0.61
TRIM28-213ENST00000598355 IFIT3O14879 490 aaKnown RBP18.87■□□□□ 0.61
TRIM28-213ENST00000598355 GOLGA8HP0CJ92 632 aa18.87■□□□□ 0.61
TRIM28-213ENST00000598355 MNX1P50219 401 aaPredicted RBP18.87■□□□□ 0.61
TRIM28-213ENST00000598355 TROAPQ12815 778 aa18.87■□□□□ 0.61
TRIM28-213ENST00000598355 SART3Q15020 963 aaKnown RBP18.87■□□□□ 0.61
TRIM28-213ENST00000598355 CCDC174Q6PII3 467 aa18.87■□□□□ 0.61
TRIM28-213ENST00000598355 FAM133AQ8N9E0 248 aa18.87■□□□□ 0.61
TRIM28-213ENST00000598355 KCNB2Q92953 911 aa18.87■□□□□ 0.61
TRIM28-213ENST00000598355 SYNGAP1Q96PV0 1343 aa18.87■□□□□ 0.61
TRIM28-213ENST00000598355 LY9Q9HBG7 655 aa18.87■□□□□ 0.61
TRIM28-213ENST00000598355 PNMA2Q9UL42 364 aa18.87■□□□□ 0.61
TRIM28-213ENST00000598355 CCPG1Q9ULG6 757 aa18.87■□□□□ 0.61
TRIM28-213ENST00000598355 PFASO15067 1338 aa18.86■□□□□ 0.61
TRIM28-213ENST00000598355 PARP1P09874 1014 aaKnown RBP18.86■□□□□ 0.61
TRIM28-213ENST00000598355 WTAPQ15007 396 aa18.86■□□□□ 0.61
TRIM28-213ENST00000598355 MUM1L1Q5H9M0 696 aa18.86■□□□□ 0.61
TRIM28-213ENST00000598355 RNF20Q5VTR2 975 aa18.86■□□□□ 0.61
TRIM28-213ENST00000598355 MTMR8Q96EF0 704 aa18.86■□□□□ 0.61
TRIM28-213ENST00000598355 TRERF1Q96PN7 1200 aa18.86■□□□□ 0.61
TRIM28-213ENST00000598355 TINF2Q9BSI4 451 aa18.86■□□□□ 0.61
TRIM28-213ENST00000598355 CPVLQ9H3G5 476 aa18.86■□□□□ 0.61
TRIM28-213ENST00000598355 HOMER2Q9NSB8 354 aa18.86■□□□□ 0.61
TRIM28-213ENST00000598355 MAD2L2Q9UI95 211 aa18.86■□□□□ 0.61
TRIM28-213ENST00000598355 ASTN1O14525 1302 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 ERICH2A1L162 156 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 PALM3A6NDB9 673 aaPredicted RBP18.85■□□□□ 0.61
TRIM28-213ENST00000598355 EPB41L2O43491 1005 aaKnown RBP18.85■□□□□ 0.61
TRIM28-213ENST00000598355 MSCO60682 206 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 FARP2O94887 1054 aaPredicted RBP18.85■□□□□ 0.61
TRIM28-213ENST00000598355 ALAS1P13196 640 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 TAL1P17542 331 aaPredicted RBP18.85■□□□□ 0.61
TRIM28-213ENST00000598355 MCM5P33992 734 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 GRM4Q14833 912 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 TMEM67Q5HYA8 995 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 CHST3Q7LGC8 479 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 ANKRD35Q8N283 1001 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 STAG2Q8N3U4 1231 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 DDX11Q96FC9 970 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 TMEM87BQ96K49 555 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 UBA5Q9GZZ9 404 aa18.85■□□□□ 0.61
TRIM28-213ENST00000598355 DDX20Q9UHI6 824 aaKnown RBP18.85■□□□□ 0.61
TRIM28-213ENST00000598355 CEP290O15078 2479 aa18.84■□□□□ 0.61
TRIM28-213ENST00000598355 SH2B2O14492 632 aaPredicted RBP18.84■□□□□ 0.61
TRIM28-213ENST00000598355 SEPT4O43236 478 aa18.84■□□□□ 0.61
TRIM28-213ENST00000598355 PRC1O43663 620 aa18.84■□□□□ 0.61
TRIM28-213ENST00000598355 LIFRP42702 1097 aa18.84■□□□□ 0.61
TRIM28-213ENST00000598355 SLC35G1Q2M3R5 365 aa18.84■□□□□ 0.61
TRIM28-213ENST00000598355 RASEFQ8IZ41 740 aa18.84■□□□□ 0.61
TRIM28-213ENST00000598355 ADGRF4Q8IZF3 695 aa18.84■□□□□ 0.61
TRIM28-213ENST00000598355 CLEC4DQ8WXI8 215 aa18.84■□□□□ 0.61
TRIM28-213ENST00000598355 MAP3K14Q99558 947 aa18.84■□□□□ 0.61
TRIM28-213ENST00000598355 CYP39A1Q9NYL5 469 aa18.84■□□□□ 0.61
TRIM28-213ENST00000598355 NFIBO00712 420 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms