RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 DOCK1Q14185 1865 aa17.52■□□□□ 0.39
TRIM28-209ENST00000597423 A0A0G2JLL6 359 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-209ENST00000597423 ESYT2A0FGR8 921 aa17.51■□□□□ 0.39
TRIM28-209ENST00000597423 IRF6O14896 467 aa17.51■□□□□ 0.39
TRIM28-209ENST00000597423 BAG4O95429 457 aaKnown RBP17.51■□□□□ 0.39
TRIM28-209ENST00000597423 MCTP2Q6DN12 878 aa17.51■□□□□ 0.39
TRIM28-209ENST00000597423 CATSPERGQ6ZRH7 1159 aa17.51■□□□□ 0.39
TRIM28-209ENST00000597423 PRRT2Q7Z6L0 340 aaPredicted RBP17.51■□□□□ 0.39
TRIM28-209ENST00000597423 BLIDQ8IZY5 108 aa17.51■□□□□ 0.39
TRIM28-209ENST00000597423 ZMYND12Q9H0C1 365 aa17.51■□□□□ 0.39
TRIM28-209ENST00000597423 RANBP17Q9H2T7 1088 aaKnown RBP17.51■□□□□ 0.39
TRIM28-209ENST00000597423 GJB4Q9NTQ9 266 aa17.51■□□□□ 0.39
TRIM28-209ENST00000597423 PPP1R9AQ9ULJ8 1098 aa17.51■□□□□ 0.39
TRIM28-209ENST00000597423 MYPNQ86TC9 1320 aa17.5■□□□□ 0.39
TRIM28-209ENST00000597423 BTBD18B2RXH4 712 aa17.5■□□□□ 0.39
TRIM28-209ENST00000597423 TOMM70O94826 608 aa17.5■□□□□ 0.39
TRIM28-209ENST00000597423 ADCY7P51828 1080 aa17.5■□□□□ 0.39
TRIM28-209ENST00000597423 GTF2A2P52657 109 aa17.5■□□□□ 0.39
TRIM28-209ENST00000597423 KRT85P78386 507 aa17.5■□□□□ 0.39
TRIM28-209ENST00000597423 FMR1Q06787 632 aaKnown RBP eCLIP17.5■□□□□ 0.393e-10■■■■□ 20.7
TRIM28-209ENST00000597423 CST9Q5W186 159 aa17.5■□□□□ 0.39
TRIM28-209ENST00000597423 SAMD1Q6SPF0 538 aaPredicted RBP17.5■□□□□ 0.39
TRIM28-209ENST00000597423 GADL1Q6ZQY3 521 aa17.5■□□□□ 0.39
TRIM28-209ENST00000597423 NOSTRINQ8IVI9 506 aa17.5■□□□□ 0.39
TRIM28-209ENST00000597423 DAGLBQ8NCG7 672 aa17.5■□□□□ 0.39
TRIM28-209ENST00000597423 KIF3CO14782 793 aa17.49■□□□□ 0.39
TRIM28-209ENST00000597423 CETPP11597 493 aa17.49■□□□□ 0.39
TRIM28-209ENST00000597423 NCLP19338 710 aaKnown RBP17.49■□□□□ 0.39
TRIM28-209ENST00000597423 OSBPP22059 807 aa17.49■□□□□ 0.39
TRIM28-209ENST00000597423 HOXA7P31268 230 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-209ENST00000597423 HUNKP57058 714 aa17.49■□□□□ 0.39
TRIM28-209ENST00000597423 CNKSR2Q8WXI2 1034 aa17.49■□□□□ 0.39
TRIM28-209ENST00000597423 CUL5Q93034 780 aa17.49■□□□□ 0.39
TRIM28-209ENST00000597423 COA7Q96BR5 231 aa17.49■□□□□ 0.39
TRIM28-209ENST00000597423 WNK4Q96J92 1243 aa17.49■□□□□ 0.39
TRIM28-209ENST00000597423 SCAND2PQ9GZW5 306 aaPredicted RBP17.49■□□□□ 0.39
TRIM28-209ENST00000597423 PSTPIP2Q9H939 334 aa17.49■□□□□ 0.39
TRIM28-209ENST00000597423 NOL7Q9UMY1 257 aaKnown RBP17.49■□□□□ 0.39
TRIM28-209ENST00000597423 MRPL11Q9Y3B7 192 aaKnown RBP17.49■□□□□ 0.39
TRIM28-209ENST00000597423 PAPPA2Q9BXP8 1791 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 DDX11L8A8MPP1 907 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 ZBTB48P10074 688 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-209ENST00000597423 DSG3P32926 999 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 OAZ1P54368 228 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 FSTL1Q12841 308 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 FOXD4L6Q3SYB3 417 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-209ENST00000597423 RILPL1Q5EBL4 403 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 CCDC174Q6PII3 467 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 FOXD4L3Q6VB84 417 aaPredicted RBP17.48■□□□□ 0.39
TRIM28-209ENST00000597423 SLC38A10Q9HBR0 1119 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 RIC8AQ9NPQ8 531 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 FBXO28Q9NVF7 368 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 AGTPBP1Q9UPW5 1226 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 ATAD5Q96QE3 1844 aa17.48■□□□□ 0.39
TRIM28-209ENST00000597423 ABCB11O95342 1321 aa17.47■□□□□ 0.39
TRIM28-209ENST00000597423 CCDC194A0A1B0GVG4 234 aa17.47■□□□□ 0.39
TRIM28-209ENST00000597423 ICAM1P05362 532 aa17.47■□□□□ 0.39
TRIM28-209ENST00000597423 YY1P25490 414 aa17.47■□□□□ 0.39
TRIM28-209ENST00000597423 MCM4P33991 863 aa17.47■□□□□ 0.39
TRIM28-209ENST00000597423 IRX3P78415 501 aaPredicted RBP17.47■□□□□ 0.39
TRIM28-209ENST00000597423 DNM1Q05193 864 aaKnown RBP17.47■□□□□ 0.39
TRIM28-209ENST00000597423 KRT25Q7Z3Z0 450 aa17.47■□□□□ 0.39
TRIM28-209ENST00000597423 MB21D1Q8N884 522 aa17.47■□□□□ 0.39
TRIM28-209ENST00000597423 PASKQ96RG2 1323 aa17.47■□□□□ 0.39
TRIM28-209ENST00000597423 VWA5AO00534 786 aa17.46■□□□□ 0.39
TRIM28-209ENST00000597423 PPP1R11O60927 126 aaPredicted RBP17.46■□□□□ 0.39
TRIM28-209ENST00000597423 TRAPPC10P48553 1259 aa17.46■□□□□ 0.39
TRIM28-209ENST00000597423 SNAP25P60880 206 aa17.46■□□□□ 0.39
TRIM28-209ENST00000597423 MYSM1Q5VVJ2 828 aa17.46■□□□□ 0.39
TRIM28-209ENST00000597423 SPRYD7Q5W111 196 aa17.46■□□□□ 0.39
TRIM28-209ENST00000597423 MCF2L2Q86YR7 1114 aa17.46■□□□□ 0.39
TRIM28-209ENST00000597423 REXO1Q8N1G1 1221 aaKnown RBP17.46■□□□□ 0.39
TRIM28-209ENST00000597423 SAMD3Q8N6K7 520 aa17.46■□□□□ 0.39
TRIM28-209ENST00000597423 PNMA3Q9UL41 463 aa17.46■□□□□ 0.39
TRIM28-209ENST00000597423 CCPG1Q9ULG6 757 aa17.46■□□□□ 0.39
TRIM28-209ENST00000597423 ADAMTS5Q9UNA0 930 aa17.46■□□□□ 0.39
TRIM28-209ENST00000597423 ZNF157P51786 506 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-209ENST00000597423 DGKZQ13574 1117 aa17.45■□□□□ 0.38
TRIM28-209ENST00000597423 USH1GQ495M9 461 aa17.45■□□□□ 0.38
TRIM28-209ENST00000597423 TYW1BQ6NUM6 668 aa17.45■□□□□ 0.38
TRIM28-209ENST00000597423 OXER1Q8TDS5 423 aa17.45■□□□□ 0.38
TRIM28-209ENST00000597423 GTF3C2Q8WUA4 911 aaPredicted RBP17.45■□□□□ 0.38
TRIM28-209ENST00000597423 CCDC102AQ96A19 550 aa17.45■□□□□ 0.38
TRIM28-209ENST00000597423 MAF1Q9H063 256 aa17.45■□□□□ 0.38
TRIM28-209ENST00000597423 PCDHA6Q9UN73 950 aa17.45■□□□□ 0.38
TRIM28-209ENST00000597423 CEP131Q9UPN4 1083 aa17.45■□□□□ 0.38
TRIM28-209ENST00000597423 SLC45A1Q9Y2W3 748 aa17.45■□□□□ 0.38
TRIM28-209ENST00000597423 PCDHA8Q9Y5H6 950 aa17.45■□□□□ 0.38
TRIM28-209ENST00000597423 KIF28PB7ZC32 967 aa17.44■□□□□ 0.38
TRIM28-209ENST00000597423 FOSP01100 380 aaPredicted RBP17.44■□□□□ 0.38
TRIM28-209ENST00000597423 NR5A1Q13285 461 aa17.44■□□□□ 0.38
TRIM28-209ENST00000597423 NFKBIBQ15653 356 aa17.44■□□□□ 0.38
TRIM28-209ENST00000597423 TKFCQ3LXA3 575 aa17.44■□□□□ 0.38
TRIM28-209ENST00000597423 RGMBQ6NW40 437 aa17.44■□□□□ 0.38
TRIM28-209ENST00000597423 SHISA4Q96DD7 197 aa17.44■□□□□ 0.38
TRIM28-209ENST00000597423 MAP3K20Q9NYL2 800 aaKnown RBP17.44■□□□□ 0.38
TRIM28-209ENST00000597423 RTEL1Q9NZ71 1219 aa17.44■□□□□ 0.38
TRIM28-209ENST00000597423 TFIP11Q9UBB9 837 aaKnown RBP17.44■□□□□ 0.38
TRIM28-209ENST00000597423 TMEM88BA6NKF7 163 aa17.43■□□□□ 0.38
TRIM28-209ENST00000597423 ATP2A1O14983 1001 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms