RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 TTBK2Q6IQ55 1244 aa15.4■□□□□ 0.06
LIG1-212ENST00000596549 MAMDC4Q6UXC1 1216 aa15.4■□□□□ 0.06
LIG1-212ENST00000596549 MFSD6Q6ZSS7 791 aa15.4■□□□□ 0.06
LIG1-212ENST00000596549 CHST13Q8NET6 341 aa15.4■□□□□ 0.06
LIG1-212ENST00000596549 CHURC1Q8WUH1 139 aa15.4■□□□□ 0.06
LIG1-212ENST00000596549 DCAF4Q8WV16 495 aa15.4■□□□□ 0.06
LIG1-212ENST00000596549 RNF146Q9NTX7 359 aa15.4■□□□□ 0.06
LIG1-212ENST00000596549 NRBP1Q9UHY1 535 aa15.4■□□□□ 0.06
LIG1-212ENST00000596549 CTDP1Q9Y5B0 961 aaPredicted RBP15.4■□□□□ 0.06
LIG1-212ENST00000596549 ASTN1O14525 1302 aa15.4■□□□□ 0.06
LIG1-212ENST00000596549 SYNGAP1Q96PV0 1343 aa15.4■□□□□ 0.06
LIG1-212ENST00000596549 TRIOBPQ9H2D6 2365 aa15.39■□□□□ 0.05
LIG1-212ENST00000596549 SNAI1O95863 264 aaPredicted RBP15.39■□□□□ 0.05
LIG1-212ENST00000596549 SNHG28P0DPA3 235 aa15.39■□□□□ 0.05
LIG1-212ENST00000596549 SLC16A2P36021 539 aa15.39■□□□□ 0.05
LIG1-212ENST00000596549 CCDC174Q6PII3 467 aa15.39■□□□□ 0.05
LIG1-212ENST00000596549 ZNF467Q7Z7K2 595 aaPredicted RBP15.39■□□□□ 0.05
LIG1-212ENST00000596549 DDX11Q96FC9 970 aa15.39■□□□□ 0.05
LIG1-212ENST00000596549 GDF15Q99988 308 aa15.39■□□□□ 0.05
LIG1-212ENST00000596549 ZKSCAN3Q9BRR0 538 aa15.39■□□□□ 0.05
LIG1-212ENST00000596549 SENP6Q9GZR1 1112 aaPredicted RBP15.39■□□□□ 0.05
LIG1-212ENST00000596549 RANBP17Q9H2T7 1088 aaKnown RBP15.39■□□□□ 0.05
LIG1-212ENST00000596549 RNF41Q9H4P4 317 aaPredicted RBP15.39■□□□□ 0.05
LIG1-212ENST00000596549 ACAD9Q9H845 621 aa15.39■□□□□ 0.05
LIG1-212ENST00000596549 A1CFQ9NQ94 594 aaKnown RBP15.39■□□□□ 0.05
LIG1-212ENST00000596549 FBXO40Q9UH90 709 aa15.39■□□□□ 0.05
LIG1-212ENST00000596549 RAD50Q92878 1312 aa15.39■□□□□ 0.05
LIG1-212ENST00000596549 B4E1Z4 1266 aa15.38■□□□□ 0.05
LIG1-212ENST00000596549 ZNF213O14771 459 aa15.38■□□□□ 0.05
LIG1-212ENST00000596549 ADCY6O43306 1168 aa15.38■□□□□ 0.05
LIG1-212ENST00000596549 LRRC41Q15345 812 aa15.38■□□□□ 0.05
LIG1-212ENST00000596549 MUM1L1Q5H9M0 696 aa15.38■□□□□ 0.05
LIG1-212ENST00000596549 BTNL9Q6UXG8 535 aa15.38■□□□□ 0.05
LIG1-212ENST00000596549 ANKRD35Q8N283 1001 aa15.38■□□□□ 0.05
LIG1-212ENST00000596549 MSL3Q8N5Y2 521 aaKnown RBP15.38■□□□□ 0.05
LIG1-212ENST00000596549 ESR2Q92731 530 aa15.38■□□□□ 0.05
LIG1-212ENST00000596549 XPNPEP3Q9NQH7 507 aa15.38■□□□□ 0.05
LIG1-212ENST00000596549 KDM4AO75164 1064 aa15.37■□□□□ 0.05
LIG1-212ENST00000596549 ADAMTS4O75173 837 aa15.37■□□□□ 0.05
LIG1-212ENST00000596549 ALAS1P13196 640 aa15.37■□□□□ 0.05
LIG1-212ENST00000596549 AKR1A1P14550 325 aa15.37■□□□□ 0.05
LIG1-212ENST00000596549 ATN1P54259 1190 aaPredicted RBP15.37■□□□□ 0.05
LIG1-212ENST00000596549 CNTN2Q02246 1040 aa15.37■□□□□ 0.05
LIG1-212ENST00000596549 ZNF543Q08ER8 600 aa15.37■□□□□ 0.05
LIG1-212ENST00000596549 SYDE2Q5VT97 1194 aa15.37■□□□□ 0.05
LIG1-212ENST00000596549 FAM133AQ8N9E0 248 aa15.37■□□□□ 0.05
LIG1-212ENST00000596549 KATNBL1Q9H079 304 aa15.37■□□□□ 0.05
LIG1-212ENST00000596549 CDKN2AIPQ9NXV6 580 aaPredicted RBP15.37■□□□□ 0.05
LIG1-212ENST00000596549 SYNRGQ9UMZ2 1314 aa15.37■□□□□ 0.05
LIG1-212ENST00000596549 SZT2Q5T011 3432 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 SOWAHBA6NEL2 793 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 KBTBD13C9JR72 458 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 PGK1P00558 417 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 ICAM1P05362 532 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 RARBP10826 455 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 MAGEA10P43363 369 aaPredicted RBP15.36■□□□□ 0.05
LIG1-212ENST00000596549 SNX17Q15036 470 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 TKFCQ3LXA3 575 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 ARMCX2Q7L311 632 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 ARRDC4Q8NCT1 418 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 TTC14Q96N46 770 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 TRERF1Q96PN7 1200 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 GPCPD1Q9NPB8 672 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 ZHX1Q9UKY1 873 aaPredicted RBP15.36■□□□□ 0.05
LIG1-212ENST00000596549 CCPG1Q9ULG6 757 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 CNPY2Q9Y2B0 182 aa15.36■□□□□ 0.05
LIG1-212ENST00000596549 DDX49Q9Y6V7 483 aaKnown RBP15.36■□□□□ 0.05
LIG1-212ENST00000596549 LAMA3Q16787 3333 aa15.35■□□□□ 0.05
LIG1-212ENST00000596549 MYCNP04198 464 aaPredicted RBP15.35■□□□□ 0.05
LIG1-212ENST00000596549 CHMLP26374 656 aa15.35■□□□□ 0.05
LIG1-212ENST00000596549 RTP1P59025 263 aa15.35■□□□□ 0.05
LIG1-212ENST00000596549 IRX5P78411 483 aaPredicted RBP15.35■□□□□ 0.05
LIG1-212ENST00000596549 IMMTQ16891 758 aaKnown RBP15.35■□□□□ 0.05
LIG1-212ENST00000596549 CCDC144CPQ8IYA2 1237 aa15.35■□□□□ 0.05
LIG1-212ENST00000596549 CYP39A1Q9NYL5 469 aa15.35■□□□□ 0.05
LIG1-212ENST00000596549 PHF24Q9UPV7 400 aa15.35■□□□□ 0.05
LIG1-212ENST00000596549 TNKSO95271 1327 aa15.35■□□□□ 0.05
LIG1-212ENST00000596549 A0A1W2PPC1 479 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 MYADML2A6NDP7 307 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 POTEB2H3BUK9 544 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 NFIBO00712 420 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 BMP8BP34820 402 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 ADCYAP1R1P41586 468 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 NT5C2P49902 561 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 PTH1RQ03431 593 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 ACVR2BQ13705 512 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 SLC39A5Q6ZMH5 540 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 DGKHQ86XP1 1220 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 ENAHQ8N8S7 591 aaPredicted RBP15.34■□□□□ 0.05
LIG1-212ENST00000596549 PURBQ96QR8 312 aaKnown RBP15.34■□□□□ 0.05
LIG1-212ENST00000596549 CPVLQ9H3G5 476 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 ZSWIM5Q9P217 1185 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 TAF6LQ9Y6J9 622 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 KIAA1217Q5T5P2 1943 aa15.34■□□□□ 0.05
LIG1-212ENST00000596549 SOX1O00570 391 aaPredicted RBP15.33■□□□□ 0.04
LIG1-212ENST00000596549 GOLGA8HP0CJ92 632 aa15.33■□□□□ 0.04
LIG1-212ENST00000596549 TRIM60Q495X7 471 aa15.33■□□□□ 0.04
LIG1-212ENST00000596549 SLC30A10Q6XR72 485 aa15.33■□□□□ 0.04
LIG1-212ENST00000596549 IQCA1Q86XH1 822 aa15.33■□□□□ 0.04
LIG1-212ENST00000596549 PNMA1Q8ND90 353 aa15.33■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms