RNA–Protein interactions for RNA: ENST00000596436.5

USHBP1-206, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 3

Gene USHBP1, Length 487 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-206ENST00000596436 STK11IPQ8N1F8 1099 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 PRPF38AQ8NAV1 312 aaKnown RBP18.9■□□□□ 0.62
USHBP1-206ENST00000596436 LENG1Q96BZ8 264 aaPredicted RBP18.9■□□□□ 0.62
USHBP1-206ENST00000596436 NUP88Q99567 741 aaPredicted RBP18.9■□□□□ 0.62
USHBP1-206ENST00000596436 NACAP1Q9BZK3 213 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 NAPBQ9H115 298 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 PPP4R2Q9NY27 417 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 SYNPO2Q9UMS6 1093 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 CNPY2Q9Y2B0 182 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 SYNRGQ9UMZ2 1314 aa18.9■□□□□ 0.62
USHBP1-206ENST00000596436 LAMA4Q16363 1823 aa18.89■□□□□ 0.61
USHBP1-206ENST00000596436 HIP1O00291 1037 aa18.89■□□□□ 0.61
USHBP1-206ENST00000596436 ACLYP53396 1101 aa18.89■□□□□ 0.61
USHBP1-206ENST00000596436 FAAP100Q0VG06 881 aa18.89■□□□□ 0.61
USHBP1-206ENST00000596436 SNRNP48Q6IEG0 339 aaKnown RBP18.89■□□□□ 0.61
USHBP1-206ENST00000596436 MKL1Q969V6 931 aa18.89■□□□□ 0.61
USHBP1-206ENST00000596436 MOXD2PA6NHM9 499 aa18.88■□□□□ 0.61
USHBP1-206ENST00000596436 HSPD1P10809 573 aaKnown RBP18.88■□□□□ 0.61
USHBP1-206ENST00000596436 CST5P28325 142 aaPredicted RBP18.88■□□□□ 0.61
USHBP1-206ENST00000596436 FGD4Q96M96 766 aa18.88■□□□□ 0.61
USHBP1-206ENST00000596436 SLC38A10Q9HBR0 1119 aa18.88■□□□□ 0.61
USHBP1-206ENST00000596436 PQBP1O60828 265 aaKnown RBP18.87■□□□□ 0.61
USHBP1-206ENST00000596436 DUSP11O75319 330 aaKnown RBP18.87■□□□□ 0.61
USHBP1-206ENST00000596436 CHMLP26374 656 aa18.87■□□□□ 0.61
USHBP1-206ENST00000596436 PPARAQ07869 468 aa18.87■□□□□ 0.61
USHBP1-206ENST00000596436 ALX1Q15699 326 aa18.87■□□□□ 0.61
USHBP1-206ENST00000596436 PLIN4Q96Q06 1357 aa18.87■□□□□ 0.61
USHBP1-206ENST00000596436 TBX21Q9UL17 535 aa18.87■□□□□ 0.61
USHBP1-206ENST00000596436 FAM184BQ9ULE4 1060 aa18.87■□□□□ 0.61
USHBP1-206ENST00000596436 ADCY6O43306 1168 aa18.86■□□□□ 0.61
USHBP1-206ENST00000596436 RAG1P15918 1043 aa18.86■□□□□ 0.61
USHBP1-206ENST00000596436 CDK7P50613 346 aa18.86■□□□□ 0.61
USHBP1-206ENST00000596436 OAZ1P54368 228 aa18.86■□□□□ 0.61
USHBP1-206ENST00000596436 NKX3-2P78367 333 aa18.86■□□□□ 0.61
USHBP1-206ENST00000596436 FPGSQ05932 587 aa18.86■□□□□ 0.61
USHBP1-206ENST00000596436 MAFAQ8NHW3 353 aaPredicted RBP18.86■□□□□ 0.61
USHBP1-206ENST00000596436 NUP133Q8WUM0 1156 aa18.86■□□□□ 0.61
USHBP1-206ENST00000596436 RNPC3Q96LT9 517 aaKnown RBP18.86■□□□□ 0.61
USHBP1-206ENST00000596436 UPF3AQ9H1J1 476 aaKnown RBP18.86■□□□□ 0.61
USHBP1-206ENST00000596436 MKNK2Q9HBH9 465 aa18.86■□□□□ 0.61
USHBP1-206ENST00000596436 STARD7Q9NQZ5 370 aa18.86■□□□□ 0.61
USHBP1-206ENST00000596436 ELP1O95163 1332 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 ZMYM6O95789 1325 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 MCM3APO60318 1980 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 RAD21O60216 631 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 PRDM1O75626 825 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 FGAP02671 866 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 CTDSPL2Q05D32 466 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 KCNA10Q16322 511 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 GMCL1P1Q8NEA9 526 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 MYLIPQ8WY64 445 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 DDX11Q96FC9 970 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 KATNBL1Q9H079 304 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 TMEM39AQ9NV64 488 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 MTMR4Q9NYA4 1195 aa18.85■□□□□ 0.61
USHBP1-206ENST00000596436 MUC3AQ02505 3323 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 MYADML2A6NDP7 307 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 MFAP1P55081 439 aaKnown RBP18.84■□□□□ 0.61
USHBP1-206ENST00000596436 ACVR2BQ13705 512 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 BMP2KLQ5H9B9 411 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 CHST13Q8NET6 341 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 CEP95Q96GE4 821 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 ABHD16BQ9H3Z7 469 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 INCENPQ9NQS7 918 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.84■□□□□ 0.61
USHBP1-206ENST00000596436 CLIP2Q9UDT6 1046 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 FBXO40Q9UH90 709 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 FEM1BQ9UK73 627 aa18.84■□□□□ 0.61
USHBP1-206ENST00000596436 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.84■□□□□ 0.61
USHBP1-206ENST00000596436 LRRC37A2A6NM11 1700 aa18.83■□□□□ 0.61
USHBP1-206ENST00000596436 RAD50Q92878 1312 aa18.83■□□□□ 0.61
USHBP1-206ENST00000596436 DCDC2CA8MYV0 355 aa18.83■□□□□ 0.6
USHBP1-206ENST00000596436 ZBED4O75132 1171 aa18.83■□□□□ 0.6
USHBP1-206ENST00000596436 TIMP1P01033 207 aa18.83■□□□□ 0.6
USHBP1-206ENST00000596436 GJA9P57773 515 aa18.83■□□□□ 0.6
USHBP1-206ENST00000596436 ZNF287Q9HBT7 754 aa18.83■□□□□ 0.6
USHBP1-206ENST00000596436 ANAPC4Q9UJX5 808 aa18.83■□□□□ 0.6
USHBP1-206ENST00000596436 ZHX1Q9UKY1 873 aaPredicted RBP18.83■□□□□ 0.6
USHBP1-206ENST00000596436 MROH7Q68CQ1 1323 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 CTAGE5O15320 804 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 TTLL1O95922 423 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 FDX1P10109 184 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 HAND2P61296 217 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 IRX5P78411 483 aaPredicted RBP18.82■□□□□ 0.6
USHBP1-206ENST00000596436 CCDC144BQ3MJ40 725 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 RASIP1Q5U651 963 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 MFSD5Q6N075 450 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 CPXCR1Q8N123 301 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 PCSK9Q8NBP7 692 aaKnown RBP18.82■□□□□ 0.6
USHBP1-206ENST00000596436 NEDD1Q8NHV4 660 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 KIFC2Q96AC6 838 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 GLT1D1Q96MS3 346 aa18.82■□□□□ 0.6
USHBP1-206ENST00000596436 RAVER2Q9HCJ3 691 aaKnown RBP18.82■□□□□ 0.6
USHBP1-206ENST00000596436 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.81■□□□□ 0.6
USHBP1-206ENST00000596436 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.81■□□□□ 0.6
USHBP1-206ENST00000596436 SGSM2O43147 1006 aa18.81■□□□□ 0.6
USHBP1-206ENST00000596436 ASGR1P07306 291 aa18.81■□□□□ 0.6
USHBP1-206ENST00000596436 FOSL2P15408 326 aa18.81■□□□□ 0.6
USHBP1-206ENST00000596436 DNAJB2P25686 324 aa18.81■□□□□ 0.6
USHBP1-206ENST00000596436 C16orf59Q7L2K0 433 aa18.81■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms