RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-204	ENST00000594828	SYNGAP1	Q96PV0	1343 aa		27.68	■■■□□ 2.02
LSM4-204	ENST00000594828	BMP8B	P34820	402 aa		27.68	■■■□□ 2.02
LSM4-204	ENST00000594828	LRRC41	Q15345	812 aa		27.68	■■■□□ 2.02
LSM4-204	ENST00000594828	RASGRP2	Q7LDG7	609 aa		27.68	■■■□□ 2.02
LSM4-204	ENST00000594828	TBC1D10C	Q8IV04	446 aa		27.68	■■■□□ 2.02
LSM4-204	ENST00000594828	ACAD9	Q9H845	621 aa		27.68	■■■□□ 2.02
LSM4-204	ENST00000594828	XPNPEP3	Q9NQH7	507 aa		27.68	■■■□□ 2.02
LSM4-204	ENST00000594828	SNAI1	O95863	264 aa	Predicted RBP	27.67	■■■□□ 2.02
LSM4-204	ENST00000594828	AKR1A1	P14550	325 aa		27.67	■■■□□ 2.02
LSM4-204	ENST00000594828	TKFC	Q3LXA3	575 aa		27.67	■■■□□ 2.02
LSM4-204	ENST00000594828	CCDC174	Q6PII3	467 aa		27.67	■■■□□ 2.02
LSM4-204	ENST00000594828	TTC14	Q96N46	770 aa		27.67	■■■□□ 2.02
LSM4-204	ENST00000594828	PDE4A	P27815	886 aa		27.66	■■■□□ 2.02
LSM4-204	ENST00000594828	SNAP25	P60880	206 aa		27.66	■■■□□ 2.02
LSM4-204	ENST00000594828	ESR2	Q92731	530 aa		27.66	■■■□□ 2.02
LSM4-204	ENST00000594828	TRERF1	Q96PN7	1200 aa		27.66	■■■□□ 2.02
LSM4-204	ENST00000594828	RNF146	Q9NTX7	359 aa		27.66	■■■□□ 2.02
LSM4-204	ENST00000594828	PCDH10	Q9P2E7	1040 aa		27.66	■■■□□ 2.02
LSM4-204	ENST00000594828	ALAS1	P13196	640 aa		27.65	■■■□□ 2.02
LSM4-204	ENST00000594828	ADCYAP1R1	P41586	468 aa		27.65	■■■□□ 2.02
LSM4-204	ENST00000594828	MAGEA10	P43363	369 aa	Predicted RBP	27.65	■■■□□ 2.02
LSM4-204	ENST00000594828	SLC39A5	Q6ZMH5	540 aa		27.65	■■■□□ 2.02
LSM4-204	ENST00000594828	DSCC1	Q9BVC3	393 aa		27.65	■■■□□ 2.02
LSM4-204	ENST00000594828	SMCHD1	A6NHR9	2005 aa		27.64	■■■□□ 2.02
LSM4-204	ENST00000594828	RTP1	P59025	263 aa		27.64	■■■□□ 2.02
LSM4-204	ENST00000594828	TTBK2	Q6IQ55	1244 aa		27.64	■■■□□ 2.02
LSM4-204	ENST00000594828	BTNL9	Q6UXG8	535 aa		27.64	■■■□□ 2.02
LSM4-204	ENST00000594828	RNF180	Q86T96	592 aa		27.64	■■■□□ 2.02
LSM4-204	ENST00000594828	ZHX1	Q9UKY1	873 aa	Predicted RBP	27.64	■■■□□ 2.02
LSM4-204	ENST00000594828	FAM184B	Q9ULE4	1060 aa		27.64	■■■□□ 2.02
LSM4-204	ENST00000594828	TRIOBP	Q9H2D6	2365 aa		27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	POTEB2	H3BUK9	544 aa		27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	PGK1	P00558	417 aa		27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	SLC16A2	P36021	539 aa		27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	TTC22	Q5TAA0	569 aa		27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	FERMT2	Q96AC1	680 aa		27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	FGD4	Q96M96	766 aa		27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	GPCPD1	Q9NPB8	672 aa		27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	A1CF	Q9NQ94	594 aa	Known RBP	27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	NEDD4	P46934	1319 aa		27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	FRMPD2	Q68DX3	1309 aa	Predicted RBP	27.63	■■■□□ 2.01
LSM4-204	ENST00000594828	NT5C2	P49902	561 aa		27.62	■■■□□ 2.01
LSM4-204	ENST00000594828	CNTN2	Q02246	1040 aa		27.62	■■■□□ 2.01
LSM4-204	ENST00000594828	ACVR2B	Q13705	512 aa		27.62	■■■□□ 2.01
LSM4-204	ENST00000594828	FAM133A	Q8N9E0	248 aa		27.62	■■■□□ 2.01
LSM4-204	ENST00000594828	ZKSCAN3	Q9BRR0	538 aa		27.62	■■■□□ 2.01
LSM4-204	ENST00000594828	ABHD16B	Q9H3Z7	469 aa		27.62	■■■□□ 2.01
LSM4-204	ENST00000594828	CTNNA3	Q9UI47	895 aa		27.62	■■■□□ 2.01
LSM4-204	ENST00000594828	CCPG1	Q9ULG6	757 aa		27.62	■■■□□ 2.01
LSM4-204	ENST00000594828	ATP11B	Q9Y2G3	1177 aa		27.62	■■■□□ 2.01
LSM4-204	ENST00000594828	ICAM1	P05362	532 aa		27.61	■■■□□ 2.01
LSM4-204	ENST00000594828	PDHB	P11177	359 aa		27.61	■■■□□ 2.01
LSM4-204	ENST00000594828	GSPT1	P15170	499 aa	Known RBP	27.61	■■■□□ 2.01
LSM4-204	ENST00000594828	IMMT	Q16891	758 aa	Known RBP	27.61	■■■□□ 2.01
LSM4-204	ENST00000594828	SYDE2	Q5VT97	1194 aa		27.61	■■■□□ 2.01
LSM4-204	ENST00000594828	ARMCX2	Q7L311	632 aa		27.61	■■■□□ 2.01
LSM4-204	ENST00000594828	LENG1	Q96BZ8	264 aa	Predicted RBP	27.61	■■■□□ 2.01
LSM4-204	ENST00000594828	RANBP17	Q9H2T7	1088 aa	Known RBP	27.61	■■■□□ 2.01
LSM4-204	ENST00000594828	PHF24	Q9UPV7	400 aa		27.61	■■■□□ 2.01
LSM4-204	ENST00000594828	DGKH	Q86XP1	1220 aa		27.6	■■■□□ 2.01
LSM4-204	ENST00000594828	CCDC144CP	Q8IYA2	1237 aa		27.6	■■■□□ 2.01
LSM4-204	ENST00000594828	UBE2O	Q9C0C9	1292 aa	Known RBP	27.6	■■■□□ 2.01
LSM4-204	ENST00000594828	PRKAG2	Q9UGJ0	569 aa		27.6	■■■□□ 2.01
LSM4-204	ENST00000594828	KDM4A	O75164	1064 aa		27.59	■■■□□ 2.01
LSM4-204	ENST00000594828	MDM2	Q00987	491 aa	Predicted RBP	27.59	■■■□□ 2.01
LSM4-204	ENST00000594828	CCDC178	Q5BJE1	867 aa		27.59	■■■□□ 2.01
LSM4-204	ENST00000594828	MUM1L1	Q5H9M0	696 aa		27.59	■■■□□ 2.01
LSM4-204	ENST00000594828	IQCA1	Q86XH1	822 aa		27.59	■■■□□ 2.01
LSM4-204	ENST00000594828	ADAMTS4	O75173	837 aa		27.58	■■■□□ 2.01
LSM4-204	ENST00000594828	DUSP11	O75319	330 aa	Known RBP	27.58	■■■□□ 2.01
LSM4-204	ENST00000594828	ZNF543	Q08ER8	600 aa		27.58	■■■□□ 2.01
LSM4-204	ENST00000594828	SNX17	Q15036	470 aa		27.58	■■■□□ 2.01
LSM4-204	ENST00000594828	LBHD1	Q9BQE6	289 aa	Predicted RBP	27.58	■■■□□ 2.01
LSM4-204	ENST00000594828	SOWAHB	A6NEL2	793 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828	ASB14	A6NK59	587 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828		B4E1Z4	1266 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828	SNHG28	P0DPA3	235 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828	CCDC144B	Q3MJ40	725 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828	TRIM60	Q495X7	471 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828	C1orf53	Q5VUE5	145 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828	NSMF	Q6X4W1	530 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828	TSEN34	Q9BSV6	310 aa	Known RBP	27.57	■■■□□ 2
LSM4-204	ENST00000594828	IL25	Q9H293	177 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828	CYP39A1	Q9NYL5	469 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828	SYNRG	Q9UMZ2	1314 aa		27.57	■■■□□ 2
LSM4-204	ENST00000594828	TDH	Q8IZJ6	230 aa		27.56	■■■□□ 2
LSM4-204	ENST00000594828	ZSWIM5	Q9P217	1185 aa		27.56	■■■□□ 2
LSM4-204	ENST00000594828	KLHDC9	Q8NEP7	349 aa		27.55	■■■□□ 2
LSM4-204	ENST00000594828	RUFY2	Q8WXA3	655 aa		27.55	■■■□□ 2
LSM4-204	ENST00000594828	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	27.55	■■■□□ 2
LSM4-204	ENST00000594828	KRT23	Q9C075	422 aa		27.55	■■■□□ 2
LSM4-204	ENST00000594828	KATNBL1	Q9H079	304 aa		27.55	■■■□□ 2
LSM4-204	ENST00000594828	PNMA2	Q9UL42	364 aa		27.55	■■■□□ 2
LSM4-204	ENST00000594828	RANBP2	P49792	3224 aa	Known RBP	27.55	■■■□□ 2
LSM4-204	ENST00000594828		A0A1W2PQ45	241 aa	Predicted RBP	27.54	■■■□□ 2
LSM4-204	ENST00000594828		A0A1W2PQY0	241 aa		27.54	■■■□□ 2
LSM4-204	ENST00000594828	SOX1	O00570	391 aa	Predicted RBP	27.54	■■■□□ 2
LSM4-204	ENST00000594828	LAMA4	Q16363	1823 aa		27.54	■■■□□ 2
LSM4-204	ENST00000594828	GPATCH4	Q5T3I0	446 aa	Known RBP	27.54	■■■□□ 2

Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms