RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 ERC2O15083 957 aa12.41□□□□□ -0.42
VPS4B-207ENST00000591519 NDUFB10O96000 172 aa12.41□□□□□ -0.42
VPS4B-207ENST00000591519 LRRC41Q15345 812 aa12.41□□□□□ -0.42
VPS4B-207ENST00000591519 TSHZ3Q63HK5 1081 aa12.41□□□□□ -0.42
VPS4B-207ENST00000591519 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS4B-207ENST00000591519 MSL3Q8N5Y2 521 aaKnown RBP12.41□□□□□ -0.42
VPS4B-207ENST00000591519 PI4K2BQ8TCG2 481 aa12.41□□□□□ -0.42
VPS4B-207ENST00000591519 SLF1Q9BQI6 1058 aa12.41□□□□□ -0.42
VPS4B-207ENST00000591519 TEX13BQ9BXU2 312 aa12.41□□□□□ -0.42
VPS4B-207ENST00000591519 RYDENQ9NUL5 291 aaKnown RBP12.41□□□□□ -0.42
VPS4B-207ENST00000591519 MTMR4Q9NYA4 1195 aa12.41□□□□□ -0.42
VPS4B-207ENST00000591519 CLIP2Q9UDT6 1046 aa12.41□□□□□ -0.42
VPS4B-207ENST00000591519 DNAH12Q6ZR08 3092 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 DNAJC25-GNG10A0A024R161 153 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 KBTBD13C9JR72 458 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 M0R2C6 588 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 PGK2P07205 417 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 ZNF865P0CJ78 1059 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-207ENST00000591519 RTP1P59025 263 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 MDM2Q00987 491 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-207ENST00000591519 MAMDC4Q6UXC1 1216 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 GMCL1P1Q8NEA9 526 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 NEDD1Q8NHV4 660 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 KCTD12Q96CX2 325 aaKnown RBP12.4□□□□□ -0.42
VPS4B-207ENST00000591519 LBHD1Q9BQE6 289 aaPredicted RBP12.4□□□□□ -0.42
VPS4B-207ENST00000591519 NACAP1Q9BZK3 213 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 PHF24Q9UPV7 400 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 RIPK3Q9Y572 518 aa12.4□□□□□ -0.42
VPS4B-207ENST00000591519 SUPT16HQ9Y5B9 1047 aaKnown RBP12.4□□□□□ -0.42
VPS4B-207ENST00000591519 RAD21O60216 631 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 TTLL1O95922 423 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 APPP05067 770 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 RARBP10826 455 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 ADCYAP1R1P41586 468 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 TDO2P48775 406 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 FAM47AQ5JRC9 791 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 ZMYM1Q5SVZ6 1142 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 ANO1Q5XXA6 986 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 STK11IPQ8N1F8 1099 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 DEFB123Q8N688 67 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 CEP95Q96GE4 821 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 NUP88Q99567 741 aaPredicted RBP12.39□□□□□ -0.43
VPS4B-207ENST00000591519 SLC38A10Q9HBR0 1119 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 MTMR10Q9NXD2 777 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 FEM1BQ9UK73 627 aa12.39□□□□□ -0.43
VPS4B-207ENST00000591519 SYNGAP1Q96PV0 1343 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 PLXNA1Q9UIW2 1896 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 ZBED4O75132 1171 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 PRDM1O75626 825 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 FDX1P10109 184 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 AKR1A1P14550 325 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 TAL1P17542 331 aaPredicted RBP12.38□□□□□ -0.43
VPS4B-207ENST00000591519 OAZ1P54368 228 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 IRX6P78412 446 aaPredicted RBP12.38□□□□□ -0.43
VPS4B-207ENST00000591519 PDE4BQ07343 736 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 FAM109BQ6ICB4 259 aaPredicted RBP12.38□□□□□ -0.43
VPS4B-207ENST00000591519 SNRNP48Q6IEG0 339 aaKnown RBP12.38□□□□□ -0.43
VPS4B-207ENST00000591519 DDX11Q96FC9 970 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 SEC62Q99442 399 aaKnown RBP12.38□□□□□ -0.43
VPS4B-207ENST00000591519 TSEN34Q9BSV6 310 aaKnown RBP12.38□□□□□ -0.43
VPS4B-207ENST00000591519 XPNPEP3Q9NQH7 507 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 PRKAG2Q9UGJ0 569 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 PLIN4Q96Q06 1357 aa12.38□□□□□ -0.43
VPS4B-207ENST00000591519 SALL3Q9BXA9 1300 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 SNAI1O95863 264 aaPredicted RBP12.37□□□□□ -0.43
VPS4B-207ENST00000591519 SLC3A2P08195 630 aaKnown RBP12.37□□□□□ -0.43
VPS4B-207ENST00000591519 MX1P20591 662 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 TFAP4Q01664 338 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 PPARAQ07869 468 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 TRIM60Q495X7 471 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 RNF180Q86T96 592 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 TICAM2Q86XR7 235 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 CHST13Q8NET6 341 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 OTUD7AQ8TE49 926 aaPredicted RBP12.37□□□□□ -0.43
VPS4B-207ENST00000591519 FBXO40Q9UH90 709 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 CNPY2Q9Y2B0 182 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 ATP11BQ9Y2G3 1177 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 STXBP5LQ9Y2K9 1186 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 MYH4Q9Y623 1939 aa12.37□□□□□ -0.43
VPS4B-207ENST00000591519 FOXP2O15409 715 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 PLA2G6O60733 806 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 ADAMTS4O75173 837 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 PGK1P00558 417 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 TSPY3P0CV98 308 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 TSPY8P0CW00 308 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 BMP3P12645 472 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 NOVP48745 357 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 SLFN13Q68D06 897 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 Q7L0L9 218 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 CPXCR1Q8N123 301 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 SLC17A8Q8NDX2 589 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 KLHDC9Q8NEP7 349 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 FERMT2Q96AC1 680 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 GMCL1Q96IK5 515 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 FSD1Q9BTV5 496 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 NAPBQ9H115 298 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 FAM184BQ9ULE4 1060 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.36□□□□□ -0.43
VPS4B-207ENST00000591519 TACC3Q9Y6A5 838 aa12.36□□□□□ -0.43
VPS4B-207ENST00000591519 COL6A3P12111 3177 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 61.8 ms