RNA–Protein interactions for RNA: ENST00000589941.1

SMAD4-209, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-209ENST00000589941 TRIM11Q96F44 468 aa10.2□□□□□ -0.78
SMAD4-209ENST00000589941 FAM129BQ96TA1 746 aa10.2□□□□□ -0.78
SMAD4-209ENST00000589941 MXD3Q9BW11 206 aa10.2□□□□□ -0.78
SMAD4-209ENST00000589941 JPH1Q9HDC5 661 aaPredicted RBP10.2□□□□□ -0.78
SMAD4-209ENST00000589941 RRP7AQ9Y3A4 280 aaKnown RBP10.2□□□□□ -0.78
SMAD4-209ENST00000589941 IGHA2P01877 340 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 PLA2G5P39877 138 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 DCTN1Q14203 1278 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 GRIK5Q16478 980 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 ELMSAN1Q6PJG2 1045 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 DDX46Q7L014 1031 aaKnown RBP10.19□□□□□ -0.78
SMAD4-209ENST00000589941 PPP1R42Q7Z4L9 355 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 NBPF11Q86T75 865 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 KCTD17Q8N5Z5 321 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 TBC1D16Q8TBP0 767 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 GUCD1Q96NT3 240 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 UTP14AQ9BVJ6 771 aaKnown RBP10.19□□□□□ -0.78
SMAD4-209ENST00000589941 SMG9Q9H0W8 520 aaKnown RBP10.19□□□□□ -0.78
SMAD4-209ENST00000589941 MIS18AQ9NYP9 233 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 A0A1B0GUL6 1792 aa10.19□□□□□ -0.78
SMAD4-209ENST00000589941 PHF20L1A8MW92 1017 aa10.18□□□□□ -0.78
SMAD4-209ENST00000589941 DIAPH1O60610 1272 aaKnown RBP10.18□□□□□ -0.78
SMAD4-209ENST00000589941 KIF4AO95239 1232 aa10.18□□□□□ -0.78
SMAD4-209ENST00000589941 ZBTB48P10074 688 aaPredicted RBP10.18□□□□□ -0.78
SMAD4-209ENST00000589941 NID1P14543 1247 aa10.18□□□□□ -0.78
SMAD4-209ENST00000589941 AFF1P51825 1210 aaKnown RBP10.18□□□□□ -0.78
SMAD4-209ENST00000589941 HYAL2Q12891 473 aa10.18□□□□□ -0.78
SMAD4-209ENST00000589941 AGBL3Q8NEM8 1001 aa10.18□□□□□ -0.78
SMAD4-209ENST00000589941 THUMPD2Q9BTF0 503 aaKnown RBP10.18□□□□□ -0.78
SMAD4-209ENST00000589941 FRRS1LQ9P0K9 344 aa10.18□□□□□ -0.78
SMAD4-209ENST00000589941 RPTORQ8N122 1335 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 PATL2C9JE40 543 aaKnown RBP10.17□□□□□ -0.78
SMAD4-209ENST00000589941 WNT10BO00744 389 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 GNB5O14775 395 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 EREGO14944 169 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 GPR182O15218 404 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 LILRB5O75023 590 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 RGS9O75916 674 aaPredicted RBP10.17□□□□□ -0.78
SMAD4-209ENST00000589941 ACPPP15309 386 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 CES1P23141 567 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 ATP11AP98196 1134 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 KCNMA1Q12791 1236 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 PARP10Q53GL7 1025 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 ARMC9Q7Z3E5 817 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 PLD4Q96BZ4 506 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 HTATIP2Q9BUP3 242 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 SALL4Q9UJQ4 1053 aa10.17□□□□□ -0.78
SMAD4-209ENST00000589941 COL1A1P02452 1464 aaPredicted RBP10.17□□□□□ -0.78
SMAD4-209ENST00000589941 COL2A1P02458 1487 aaPredicted RBP10.17□□□□□ -0.78
SMAD4-209ENST00000589941 PHACTR2O75167 634 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 FARP2O94887 1054 aaPredicted RBP10.16□□□□□ -0.78
SMAD4-209ENST00000589941 GHRHP01286 108 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 COL8A1P27658 744 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 CTGFP29279 349 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 NF2P35240 595 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 LRP10Q7Z4F1 713 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 SNX29Q8TEQ0 813 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 GDF15Q99988 308 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 PLVAPQ9BX97 442 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 RBCK1Q9BYM8 510 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 DCTN4Q9UJW0 460 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 NR2E3Q9Y5X4 410 aa10.16□□□□□ -0.78
SMAD4-209ENST00000589941 MYH3P11055 1940 aa10.15□□□□□ -0.78
SMAD4-209ENST00000589941 U2SURPO15042 1029 aaKnown RBP10.15□□□□□ -0.78
SMAD4-209ENST00000589941 UFL1O94874 794 aa10.15□□□□□ -0.78
SMAD4-209ENST00000589941 ANXA1P04083 346 aa10.15□□□□□ -0.78
SMAD4-209ENST00000589941 PROSER3Q2NL68 480 aa10.15□□□□□ -0.78
SMAD4-209ENST00000589941 NLRP10Q86W26 655 aa10.15□□□□□ -0.78
SMAD4-209ENST00000589941 HOMEZQ8IX15 550 aa10.15□□□□□ -0.78
SMAD4-209ENST00000589941 CEP120Q8N960 986 aa10.15□□□□□ -0.78
SMAD4-209ENST00000589941 CITED4Q96RK1 184 aa10.15□□□□□ -0.78
SMAD4-209ENST00000589941 EYA3Q99504 573 aa10.15□□□□□ -0.78
SMAD4-209ENST00000589941 AOX1Q06278 1338 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 RNF225M0QZC1 329 aaPredicted RBP10.14□□□□□ -0.79
SMAD4-209ENST00000589941 CCL5P13501 91 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 MAPK1P28482 360 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 PRKAR2BP31323 418 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 GJA8P48165 433 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 INHBEP58166 350 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 ORC1Q13415 861 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 ADAMTSL4Q6UY14 1074 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 TMC7Q7Z402 723 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 TMC4Q7Z404 712 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 NCAPG2Q86XI2 1143 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 BRI3BPQ8WY22 251 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 TTC9Q92623 222 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 RASSF4Q9H2L5 321 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 ZFYVE28Q9HCC9 887 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 ZMYND8Q9ULU4 1186 aaPredicted RBP10.14□□□□□ -0.79
SMAD4-209ENST00000589941 LTBP2Q14767 1821 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 MAST2Q6P0Q8 1798 aa10.14□□□□□ -0.79
SMAD4-209ENST00000589941 POLR3DP05423 398 aaPredicted RBP10.13□□□□□ -0.79
SMAD4-209ENST00000589941 TAF1CQ15572 869 aaPredicted RBP10.13□□□□□ -0.79
SMAD4-209ENST00000589941 MAP3K11Q16584 847 aa10.13□□□□□ -0.79
SMAD4-209ENST00000589941 LRIT3Q3SXY7 679 aa10.13□□□□□ -0.79
SMAD4-209ENST00000589941 FAM43AQ8N2R8 423 aa10.13□□□□□ -0.79
SMAD4-209ENST00000589941 YTHDC1Q96MU7 727 aaKnown RBP10.13□□□□□ -0.79
SMAD4-209ENST00000589941 FAM161BQ96MY7 647 aa10.13□□□□□ -0.79
SMAD4-209ENST00000589941 NIF3L1Q9GZT8 377 aa10.13□□□□□ -0.79
SMAD4-209ENST00000589941 PCDHAC2Q9Y5I4 1007 aa10.13□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms