RNA–Protein interactions for RNA: ENST00000587945.1

VMP1-206, Transcript of vacuole membrane protein 1, humanhuman

TSL 3

Gene VMP1, Length 583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-206ENST00000587945 PPP4R3BQ5MIZ7 849 aa16.97■□□□□ 0.31
VMP1-206ENST00000587945 RCSD1Q6JBY9 416 aa16.97■□□□□ 0.31
VMP1-206ENST00000587945 CCDC174Q6PII3 467 aa16.97■□□□□ 0.31
VMP1-206ENST00000587945 Q7L0L9 218 aa16.97■□□□□ 0.31
VMP1-206ENST00000587945 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.97■□□□□ 0.31
VMP1-206ENST00000587945 SH3RF1Q7Z6J0 888 aa16.97■□□□□ 0.31
VMP1-206ENST00000587945 ZNF467Q7Z7K2 595 aaPredicted RBP16.97■□□□□ 0.31
VMP1-206ENST00000587945 CHD1LQ86WJ1 897 aa16.97■□□□□ 0.31
VMP1-206ENST00000587945 CDKN2AIPQ9NXV6 580 aaPredicted RBP16.97■□□□□ 0.31
VMP1-206ENST00000587945 FBXO40Q9UH90 709 aa16.97■□□□□ 0.31
VMP1-206ENST00000587945 FAM184BQ9ULE4 1060 aa16.97■□□□□ 0.31
VMP1-206ENST00000587945 COL11A1P12107 1806 aaPredicted RBP16.97■□□□□ 0.31
VMP1-206ENST00000587945 DNAH12Q6ZR08 3092 aa16.97■□□□□ 0.31
VMP1-206ENST00000587945 FRMPD3Q5JV73 1810 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 FDX1P10109 184 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 TLE2Q04725 743 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 AAMPQ13685 434 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 ACVR2BQ13705 512 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 CCDC96Q2M329 555 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 PLEKHM2Q8IWE5 1019 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 ACAD9Q9H845 621 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 PDLIM7Q9NR12 457 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 RNF146Q9NTX7 359 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 PRR12Q9ULL5 1215 aa16.96■□□□□ 0.31
VMP1-206ENST00000587945 SYNRGQ9UMZ2 1314 aa16.96■□□□□ 0.3
VMP1-206ENST00000587945 A0A1W2PQ45 241 aaPredicted RBP16.95■□□□□ 0.3
VMP1-206ENST00000587945 A0A1W2PQY0 241 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 TRIM43BA6NCK2 446 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 MYADML2A6NDP7 307 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 POTEB2H3BUK9 544 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 ADCY6O43306 1168 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 PLA2G6O60733 806 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 ALAS1P13196 640 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 NOVP48745 357 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 NUCB1Q02818 461 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 TTBK2Q6IQ55 1244 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 ARMCX2Q7L311 632 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 CCDC144CPQ8IYA2 1237 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 TRIM43Q96BQ3 446 aaPredicted RBP16.95■□□□□ 0.3
VMP1-206ENST00000587945 TRERF1Q96PN7 1200 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 A1CFQ9NQ94 594 aaKnown RBP16.95■□□□□ 0.3
VMP1-206ENST00000587945 DDX49Q9Y6V7 483 aaKnown RBP16.95■□□□□ 0.3
VMP1-206ENST00000587945 CCDC171Q6TFL3 1326 aa16.95■□□□□ 0.3
VMP1-206ENST00000587945 SDSP20132 328 aa16.94■□□□□ 0.3
VMP1-206ENST00000587945 SLC16A2P36021 539 aa16.94■□□□□ 0.3
VMP1-206ENST00000587945 KCNA10Q16322 511 aa16.94■□□□□ 0.3
VMP1-206ENST00000587945 MUM1L1Q5H9M0 696 aa16.94■□□□□ 0.3
VMP1-206ENST00000587945 C1orf53Q5VUE5 145 aa16.94■□□□□ 0.3
VMP1-206ENST00000587945 DEFB123Q8N688 67 aa16.94■□□□□ 0.3
VMP1-206ENST00000587945 FAM133AQ8N9E0 248 aa16.94■□□□□ 0.3
VMP1-206ENST00000587945 KLHDC9Q8NEP7 349 aa16.94■□□□□ 0.3
VMP1-206ENST00000587945 BADQ92934 168 aa16.94■□□□□ 0.3
VMP1-206ENST00000587945 TMEM47Q9BQJ4 181 aa16.94■□□□□ 0.3
VMP1-206ENST00000587945 SOWAHBA6NEL2 793 aa16.93■□□□□ 0.3
VMP1-206ENST00000587945 PQBP1O60828 265 aaKnown RBP16.93■□□□□ 0.3
VMP1-206ENST00000587945 DUSP11O75319 330 aaKnown RBP16.93■□□□□ 0.3
VMP1-206ENST00000587945 ACLYP53396 1101 aa16.93■□□□□ 0.3
VMP1-206ENST00000587945 TKFCQ3LXA3 575 aa16.93■□□□□ 0.3
VMP1-206ENST00000587945 CCDC144BQ3MJ40 725 aa16.93■□□□□ 0.3
VMP1-206ENST00000587945 TICAM2Q86XR7 235 aa16.93■□□□□ 0.3
VMP1-206ENST00000587945 TBC1D10CQ8IV04 446 aa16.93■□□□□ 0.3
VMP1-206ENST00000587945 DCAF4Q8WV16 495 aa16.93■□□□□ 0.3
VMP1-206ENST00000587945 KATNBL1Q9H079 304 aa16.93■□□□□ 0.3
VMP1-206ENST00000587945 ABHD16BQ9H3Z7 469 aa16.93■□□□□ 0.3
VMP1-206ENST00000587945 GPCPD1Q9NPB8 672 aa16.93■□□□□ 0.3
VMP1-206ENST00000587945 FRMPD2Q68DX3 1309 aaPredicted RBP16.93■□□□□ 0.3
VMP1-206ENST00000587945 TOP1P11387 765 aaKnown RBP16.92■□□□□ 0.3
VMP1-206ENST00000587945 ITGB8P26012 769 aa16.92■□□□□ 0.3
VMP1-206ENST00000587945 C9orf50Q5SZB4 431 aa16.92■□□□□ 0.3
VMP1-206ENST00000587945 CCSAPQ6IQ19 270 aaPredicted RBP16.92■□□□□ 0.3
VMP1-206ENST00000587945 GPR153Q6NV75 609 aa16.92■□□□□ 0.3
VMP1-206ENST00000587945 PURBQ96QR8 312 aaKnown RBP16.92■□□□□ 0.3
VMP1-206ENST00000587945 TSEN34Q9BSV6 310 aaKnown RBP16.92■□□□□ 0.3
VMP1-206ENST00000587945 OSBPL3Q9H4L5 887 aa16.92■□□□□ 0.3
VMP1-206ENST00000587945 TCP11L1Q9NUJ3 509 aa16.92■□□□□ 0.3
VMP1-206ENST00000587945 CCPG1Q9ULG6 757 aa16.92■□□□□ 0.3
VMP1-206ENST00000587945 ZMYM6O95789 1325 aa16.92■□□□□ 0.3
VMP1-206ENST00000587945 C11orf97A0A1B0GVM6 126 aaPredicted RBP16.91■□□□□ 0.3
VMP1-206ENST00000587945 C6orf222P0C671 652 aaPredicted RBP16.91■□□□□ 0.3
VMP1-206ENST00000587945 PTGS1P23219 599 aa16.91■□□□□ 0.3
VMP1-206ENST00000587945 SHHQ15465 462 aa16.91■□□□□ 0.3
VMP1-206ENST00000587945 AKNAD1Q5T1N1 836 aa16.91■□□□□ 0.3
VMP1-206ENST00000587945 SYDE2Q5VT97 1194 aa16.91■□□□□ 0.3
VMP1-206ENST00000587945 CWC27Q6UX04 472 aaKnown RBP16.91■□□□□ 0.3
VMP1-206ENST00000587945 MFSD6Q6ZSS7 791 aa16.91■□□□□ 0.3
VMP1-206ENST00000587945 RANBP17Q9H2T7 1088 aaKnown RBP16.91■□□□□ 0.3
VMP1-206ENST00000587945 STARD7Q9NQZ5 370 aa16.91■□□□□ 0.3
VMP1-206ENST00000587945 ASTN1O14525 1302 aa16.91■□□□□ 0.3
VMP1-206ENST00000587945 ZNFX1Q9P2E3 1918 aaKnown RBP16.9■□□□□ 0.3
VMP1-206ENST00000587945 MYH4Q9Y623 1939 aa16.9■□□□□ 0.3
VMP1-206ENST00000587945 MOXD2PA6NHM9 499 aa16.9■□□□□ 0.3
VMP1-206ENST00000587945 ICAM1P05362 532 aa16.9■□□□□ 0.3
VMP1-206ENST00000587945 CLTBP09497 229 aa16.9■□□□□ 0.3
VMP1-206ENST00000587945 BTNL9Q6UXG8 535 aa16.9■□□□□ 0.3
VMP1-206ENST00000587945 NSMFQ6X4W1 530 aa16.9■□□□□ 0.3
VMP1-206ENST00000587945 MTMR10Q9NXD2 777 aa16.9■□□□□ 0.3
VMP1-206ENST00000587945 CYP39A1Q9NYL5 469 aa16.9■□□□□ 0.3
VMP1-206ENST00000587945 SMCHD1A6NHR9 2005 aa16.9■□□□□ 0.3
VMP1-206ENST00000587945 NEDD4P46934 1319 aa16.9■□□□□ 0.3
VMP1-206ENST00000587945 ASGR1P07306 291 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms