RNA–Protein interactions for RNA: ENST00000586407.1

LIG3-208, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 815 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-208ENST00000586407 SYDE2Q5VT97 1194 aa33.04■■■□□ 2.88
LIG3-208ENST00000586407 FGD4Q96M96 766 aa33.04■■■□□ 2.88
LIG3-208ENST00000586407 ZSWIM5Q9P217 1185 aa33.04■■■□□ 2.88
LIG3-208ENST00000586407 FBXO40Q9UH90 709 aa33.04■■■□□ 2.88
LIG3-208ENST00000586407 SEPT4O43236 478 aa33.03■■■□□ 2.88
LIG3-208ENST00000586407 MSCO60682 206 aa33.03■■■□□ 2.88
LIG3-208ENST00000586407 ACAD9Q9H845 621 aa33.03■■■□□ 2.88
LIG3-208ENST00000586407 TAF6LQ9Y6J9 622 aa33.03■■■□□ 2.88
LIG3-208ENST00000586407 LCTP09848 1927 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 MYCNP04198 464 aaPredicted RBP33.02■■■□□ 2.88
LIG3-208ENST00000586407 GOLGA8HP0CJ92 632 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 COL6A1P12109 1028 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 CNTN2Q02246 1040 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 ZNF543Q08ER8 600 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 MUM1L1Q5H9M0 696 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 GJC2Q5T442 439 aaPredicted RBP33.02■■■□□ 2.88
LIG3-208ENST00000586407 BTNL9Q6UXG8 535 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 DHX30Q7L2E3 1194 aaKnown RBP eCLIP33.02■■■□□ 2.88
LIG3-208ENST00000586407 CENPQQ7L2Z9 268 aaPredicted RBP33.02■■■□□ 2.88
LIG3-208ENST00000586407 IQCA1Q86XH1 822 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 C7orf61Q8IZ16 206 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 TRERF1Q96PN7 1200 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 ZSCAN10Q96SZ4 725 aaPredicted RBP33.02■■■□□ 2.88
LIG3-208ENST00000586407 CPVLQ9H3G5 476 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 PCDH10Q9P2E7 1040 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 CCPG1Q9ULG6 757 aa33.02■■■□□ 2.88
LIG3-208ENST00000586407 DGKHQ86XP1 1220 aa33.01■■■□□ 2.87
LIG3-208ENST00000586407 ENAHQ8N8S7 591 aaPredicted RBP33.01■■■□□ 2.87
LIG3-208ENST00000586407 LENG1Q96BZ8 264 aaPredicted RBP33.01■■■□□ 2.87
LIG3-208ENST00000586407 KRT23Q9C075 422 aa33.01■■■□□ 2.87
LIG3-208ENST00000586407 RANBP17Q9H2T7 1088 aaKnown RBP33.01■■■□□ 2.87
LIG3-208ENST00000586407 A1CFQ9NQ94 594 aaKnown RBP33.01■■■□□ 2.87
LIG3-208ENST00000586407 COLQQ9Y215 455 aaPredicted RBP33.01■■■□□ 2.87
LIG3-208ENST00000586407 NR2E3Q9Y5X4 410 aa33.01■■■□□ 2.87
LIG3-208ENST00000586407 TNKSO95271 1327 aa33.01■■■□□ 2.87
LIG3-208ENST00000586407 CYP21A2P08686 494 aa33■■■□□ 2.87
LIG3-208ENST00000586407 SNHG28P0DPA3 235 aa33■■■□□ 2.87
LIG3-208ENST00000586407 CYB5R4Q7L1T6 521 aa33■■■□□ 2.87
LIG3-208ENST00000586407 SNAI1O95863 264 aaPredicted RBP32.99■■■□□ 2.87
LIG3-208ENST00000586407 ZNF865P0CJ78 1059 aaPredicted RBP32.99■■■□□ 2.87
LIG3-208ENST00000586407 PNMA1Q8ND90 353 aa32.99■■■□□ 2.87
LIG3-208ENST00000586407 CHRDL2Q6WN34 429 aa32.98■■■□□ 2.87
LIG3-208ENST00000586407 KAT14Q9H8E8 782 aa32.98■■■□□ 2.87
LIG3-208ENST00000586407 CNNM2Q9H8M5 875 aa32.98■■■□□ 2.87
LIG3-208ENST00000586407 DDX49Q9Y6V7 483 aaKnown RBP32.98■■■□□ 2.87
LIG3-208ENST00000586407 ICAM1P05362 532 aa32.97■■■□□ 2.87
LIG3-208ENST00000586407 LRRC26Q2I0M4 334 aa32.97■■■□□ 2.87
LIG3-208ENST00000586407 TKFCQ3LXA3 575 aa32.97■■■□□ 2.87
LIG3-208ENST00000586407 SENP6Q9GZR1 1112 aaPredicted RBP32.97■■■□□ 2.87
LIG3-208ENST00000586407 UBA5Q9GZZ9 404 aa32.97■■■□□ 2.87
LIG3-208ENST00000586407 ZHX1Q9UKY1 873 aaPredicted RBP32.97■■■□□ 2.87
LIG3-208ENST00000586407 ZMYND8Q9ULU4 1186 aaPredicted RBP32.97■■■□□ 2.87
LIG3-208ENST00000586407 CNPY2Q9Y2B0 182 aa32.97■■■□□ 2.87
LIG3-208ENST00000586407 U3KPZ7 1027 aaPredicted RBP32.97■■■□□ 2.87
LIG3-208ENST00000586407 POTEB2H3BUK9 544 aa32.96■■■□□ 2.87
LIG3-208ENST00000586407 CCDC178Q5BJE1 867 aa32.96■■■□□ 2.87
LIG3-208ENST00000586407 ANKS1AQ92625 1134 aa32.96■■■□□ 2.87
LIG3-208ENST00000586407 UBAC1Q9BSL1 405 aa32.96■■■□□ 2.87
LIG3-208ENST00000586407 NRBP1Q9UHY1 535 aa32.96■■■□□ 2.87
LIG3-208ENST00000586407 DNM1LO00429 736 aa32.95■■■□□ 2.87
LIG3-208ENST00000586407 HABP4Q5JVS0 413 aaKnown RBP32.95■■■□□ 2.87
LIG3-208ENST00000586407 MAMDC4Q6UXC1 1216 aa32.95■■■□□ 2.87
LIG3-208ENST00000586407 NSMFQ6X4W1 530 aa32.95■■■□□ 2.87
LIG3-208ENST00000586407 STOX1Q6ZVD7 989 aa32.95■■■□□ 2.87
LIG3-208ENST00000586407 FAM133AQ8N9E0 248 aa32.95■■■□□ 2.87
LIG3-208ENST00000586407 PURBQ96QR8 312 aaKnown RBP32.95■■■□□ 2.87
LIG3-208ENST00000586407 CDKN2AIPQ9NXV6 580 aaPredicted RBP32.95■■■□□ 2.87
LIG3-208ENST00000586407 SYNGAP1Q96PV0 1343 aa32.95■■■□□ 2.86
LIG3-208ENST00000586407 TRIOBPQ9H2D6 2365 aa32.94■■■□□ 2.86
LIG3-208ENST00000586407 SOWAHBA6NEL2 793 aa32.94■■■□□ 2.86
LIG3-208ENST00000586407 NT5C2P49902 561 aa32.94■■■□□ 2.86
LIG3-208ENST00000586407 ATN1P54259 1190 aaPredicted RBP32.94■■■□□ 2.86
LIG3-208ENST00000586407 ARMCX2Q7L311 632 aa32.94■■■□□ 2.86
LIG3-208ENST00000586407 ZNF467Q7Z7K2 595 aaPredicted RBP32.94■■■□□ 2.86
LIG3-208ENST00000586407 MYH6P13533 1939 aa32.94■■■□□ 2.86
LIG3-208ENST00000586407 LRRC37A2A6NM11 1700 aa32.94■■■□□ 2.86
LIG3-208ENST00000586407 SYN1P17600 705 aa32.93■■■□□ 2.86
LIG3-208ENST00000586407 LRRC41Q15345 812 aa32.93■■■□□ 2.86
LIG3-208ENST00000586407 CCDC144CPQ8IYA2 1237 aa32.93■■■□□ 2.86
LIG3-208ENST00000586407 MSL3Q8N5Y2 521 aaKnown RBP32.93■■■□□ 2.86
LIG3-208ENST00000586407 ARRDC4Q8NCT1 418 aa32.93■■■□□ 2.86
LIG3-208ENST00000586407 XPNPEP3Q9NQH7 507 aa32.93■■■□□ 2.86
LIG3-208ENST00000586407 RBM8AQ9Y5S9 174 aaKnown RBP32.93■■■□□ 2.86
LIG3-208ENST00000586407 ASTN1O14525 1302 aa32.93■■■□□ 2.86
LIG3-208ENST00000586407 NFIBO00712 420 aa32.92■■■□□ 2.86
LIG3-208ENST00000586407 PGK1P00558 417 aa32.92■■■□□ 2.86
LIG3-208ENST00000586407 RARBP10826 455 aa32.92■■■□□ 2.86
LIG3-208ENST00000586407 SEC23AQ15436 765 aa32.92■■■□□ 2.86
LIG3-208ENST00000586407 MAP4K1Q92918 833 aa32.92■■■□□ 2.86
LIG3-208ENST00000586407 CYP39A1Q9NYL5 469 aa32.92■■■□□ 2.86
LIG3-208ENST00000586407 KBTBD13C9JR72 458 aa32.91■■■□□ 2.86
LIG3-208ENST00000586407 E7EWF7 191 aa32.91■■■□□ 2.86
LIG3-208ENST00000586407 AKR1A1P14550 325 aa32.91■■■□□ 2.86
LIG3-208ENST00000586407 GPATCH4Q5T3I0 446 aaKnown RBP32.91■■■□□ 2.86
LIG3-208ENST00000586407 IFIT1BQ5T764 474 aaKnown RBP32.91■■■□□ 2.86
LIG3-208ENST00000586407 ESYT1Q9BSJ8 1104 aa32.91■■■□□ 2.86
LIG3-208ENST00000586407 TRDNQ13061 729 aa32.9■■■□□ 2.86
LIG3-208ENST00000586407 CHST3Q7LGC8 479 aa32.9■■■□□ 2.86
LIG3-208ENST00000586407 FERMT2Q96AC1 680 aa32.9■■■□□ 2.86
LIG3-208ENST00000586407 SENP2Q9HC62 589 aa32.9■■■□□ 2.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms