RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ZYXQ15942 572 aaKnown RBP7.09□□□□□ -1.27
LIG3-206ENST00000586058 EAPPQ56P03 285 aaPredicted RBP7.09□□□□□ -1.27
LIG3-206ENST00000586058 TMEM92Q6UXU6 159 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 KRT25Q7Z3Z0 450 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 SCYL3Q8IZE3 742 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 BLIDQ8IZY5 108 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 REXO1Q8N1G1 1221 aaKnown RBP7.09□□□□□ -1.27
LIG3-206ENST00000586058 STAG2Q8N3U4 1231 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 TRPM4Q8TD43 1214 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 ZC3H15Q8WU90 426 aaKnown RBP7.09□□□□□ -1.27
LIG3-206ENST00000586058 CUL5Q93034 780 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 MS4A4AQ96JQ5 239 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 AIFM3Q96NN9 605 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 NAP1L4Q99733 375 aaKnown RBP7.09□□□□□ -1.27
LIG3-206ENST00000586058 PHF20Q9BVI0 1012 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 VCPKMTQ9H867 229 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 EHMT1Q9H9B1 1298 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 VAT1LQ9HCJ6 419 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 BARHL2Q9NY43 387 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 TMOD4Q9NZQ9 345 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 PCDHA4Q9UN74 947 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 KCNJ14Q9UNX9 436 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 TMX2Q9Y320 296 aa7.09□□□□□ -1.27
LIG3-206ENST00000586058 hCG_1642624A0A1W2PR95 340 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 ESYT2A0FGR8 921 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 TMEM232C9JQI7 657 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 F5H6K3 240 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 SOCS7O14512 581 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 WDR46O15213 610 aaKnown RBP7.08□□□□□ -1.28
LIG3-206ENST00000586058 SPTLC2O15270 562 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 DTNBO60941 627 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 NDUFB10O96000 172 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 EGFRP00533 1210 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 HOXB1P14653 301 aaPredicted RBP7.08□□□□□ -1.28
LIG3-206ENST00000586058 U2AF2P26368 475 aaKnown RBP eCLIP7.08□□□□□ -1.287e-8■■■□□ 18.4
LIG3-206ENST00000586058 TXLNAP40222 546 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 TRAPPC10P48553 1259 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 KLRC3Q07444 240 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 NONOQ15233 471 aaKnown RBP eCLIP7.08□□□□□ -1.28
LIG3-206ENST00000586058 CDC37Q16543 378 aaPredicted RBP7.08□□□□□ -1.28
LIG3-206ENST00000586058 SYDE2Q5VT97 1194 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 ANO1Q5XXA6 986 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 OTUD7BQ6GQQ9 843 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 CAVIN1Q6NZI2 390 aaKnown RBP7.08□□□□□ -1.28
LIG3-206ENST00000586058 KCTD1Q719H9 257 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 ARMC9Q7Z3E5 817 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 KRT26Q7Z3Y9 468 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 DAGLBQ8NCG7 672 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 LEO1Q8WVC0 666 aaPredicted RBP7.08□□□□□ -1.28
LIG3-206ENST00000586058 GPKOWQ92917 476 aaPredicted RBP eCLIP7.08□□□□□ -1.28
LIG3-206ENST00000586058 PIGSQ96S52 555 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 GNL3Q9BVP2 549 aaKnown RBP eCLIP7.08□□□□□ -1.28
LIG3-206ENST00000586058 AMNQ9BXJ7 453 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 TANGO6Q9C0B7 1094 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 RIOX1Q9H6W3 641 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 GDPD2Q9HCC8 539 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 LMBRD1Q9NUN5 540 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 RTEL1Q9NZ71 1219 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 HOOK1Q9UJC3 728 aaKnown RBP7.08□□□□□ -1.28
LIG3-206ENST00000586058 FEM1BQ9UK73 627 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 PLXNB2O15031 1838 aa7.08□□□□□ -1.28
LIG3-206ENST00000586058 KIAA1217Q5T5P2 1943 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 PLXNA1Q9UIW2 1896 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 SMCO2A6NFE2 343 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 TRIM75PA6NK02 468 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 BTBD18B2RXH4 712 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 C19orf81C9J6K1 198 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 USP17L10C9JJH3 530 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 STXBP3O00186 592 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 KINO60870 393 aaKnown RBP7.07□□□□□ -1.28
LIG3-206ENST00000586058 FDX1P10109 184 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 GUCY1A2P33402 732 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 MRPL12P52815 198 aaKnown RBP7.07□□□□□ -1.28
LIG3-206ENST00000586058 MAP3K10Q02779 954 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 FUT2Q10981 343 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 ORC2Q13416 577 aaPredicted RBP7.07□□□□□ -1.28
LIG3-206ENST00000586058 PKN1Q16512 942 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 TTC38Q5R3I4 469 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 FAM83BQ5T0W9 1011 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 CCDC183Q5T5S1 534 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 NBPF12Q5TAG4 269 aaPredicted RBP7.07□□□□□ -1.28
LIG3-206ENST00000586058 WWC2Q6AWC2 1192 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 FAM173BQ6P4H8 233 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 FBXO11Q86XK2 927 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 TEX2Q8IWB9 1127 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 ADGRF4Q8IZF3 695 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 ANP32BQ92688 251 aaKnown RBP7.07□□□□□ -1.28
LIG3-206ENST00000586058 TEPSINQ96N21 525 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 USP28Q96RU2 1077 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 PYM1Q9BRP8 204 aaKnown RBP7.07□□□□□ -1.28
LIG3-206ENST00000586058 UBA5Q9GZZ9 404 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 DDX19AQ9NUU7 478 aaKnown RBP7.07□□□□□ -1.28
LIG3-206ENST00000586058 FAM13BQ9NYF5 915 aa7.07□□□□□ -1.28
LIG3-206ENST00000586058 TFIP11Q9UBB9 837 aaKnown RBP7.07□□□□□ -1.28
LIG3-206ENST00000586058 ASTN2O75129 1339 aaPredicted RBP7.06□□□□□ -1.28
LIG3-206ENST00000586058 MYH11P35749 1972 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 RLFQ13129 1914 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 SPDYE3A6NKU9 549 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 KIF28PB7ZC32 967 aa7.06□□□□□ -1.28
LIG3-206ENST00000586058 LAD1O00515 517 aa7.06□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms