RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-223ENST00000583595 A0A1W2PQU0 124 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 IQCA1LA6NCM1 817 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 CHURC1-FNTBB4DL54 471 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 PLD2O14939 933 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 PMLP29590 882 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 GRK4P32298 578 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 NKG7Q16617 165 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 SV2CQ496J9 727 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 NLRC3Q7RTR2 1065 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 TAB3Q8N5C8 712 aaPredicted RBP6.46□□□□□ -1.38
SS18-223ENST00000583595 FMNL2Q96PY5 1086 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 CDC6Q99741 560 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 FOXQ1Q9C009 403 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 GMIPQ9P107 970 aa6.46□□□□□ -1.38
SS18-223ENST00000583595 SHTN1A0MZ66 631 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 EYA4O95677 639 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 FUT4P22083 530 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 GNALP38405 381 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 TXKP42681 527 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 RAB27AP51159 221 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 EPHB1P54762 984 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 SLC7A5Q01650 507 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 MCL1Q07820 350 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 PPP2R5AQ15172 486 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 ZNF792Q3KQV3 632 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 FNDC3BQ53EP0 1204 aaKnown RBP6.45□□□□□ -1.38
SS18-223ENST00000583595 ZC3H12BQ5HYM0 836 aaKnown RBP6.45□□□□□ -1.38
SS18-223ENST00000583595 LHFPL2Q6ZUX7 228 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 LRRTM3Q86VH5 581 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 HID1Q8IV36 788 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 AFAP1L2Q8N4X5 818 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 PHAXQ9H814 394 aaKnown RBP6.45□□□□□ -1.38
SS18-223ENST00000583595 CNNM2Q9H8M5 875 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 PRDM5Q9NQX1 630 aaPredicted RBP6.45□□□□□ -1.38
SS18-223ENST00000583595 FAM86C1Q9NVL1 165 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 MAPRE3Q9UPY8 281 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 MRPS23Q9Y3D9 190 aaKnown RBP6.45□□□□□ -1.38
SS18-223ENST00000583595 SNX11Q9Y5W9 270 aa6.45□□□□□ -1.38
SS18-223ENST00000583595 GNAT3A8MTJ3 354 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 TNFRSF10CO14798 259 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 KIF3BO15066 747 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 SLITRK5O94991 958 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 CENPBP07199 599 aaPredicted RBP6.44□□□□□ -1.38
SS18-223ENST00000583595 ITGB5P18084 799 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 CAP2P40123 477 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 MLECQ14165 292 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 NKPD1Q17RQ9 610 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 CDCP2Q5VXM1 449 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 DDX46Q7L014 1031 aaKnown RBP6.44□□□□□ -1.38
SS18-223ENST00000583595 SPACA3Q8IXA5 215 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 LEO1Q8WVC0 666 aaPredicted RBP6.44□□□□□ -1.38
SS18-223ENST00000583595 DDX1Q92499 740 aaKnown RBP6.44□□□□□ -1.38
SS18-223ENST00000583595 APBA2Q99767 749 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 MIPEPQ99797 713 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 LGR4Q9BXB1 951 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 ASPSCR1Q9BZE9 553 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 CCDC8Q9H0W5 538 aaPredicted RBP6.44□□□□□ -1.38
SS18-223ENST00000583595 EPN3Q9H201 632 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 ARHGEF4Q9NR80 690 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 KLHL3Q9UH77 587 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 ZNF214Q9UL59 606 aaPredicted RBP6.44□□□□□ -1.38
SS18-223ENST00000583595 PHLDB1Q86UU1 1377 aa6.44□□□□□ -1.38
SS18-223ENST00000583595 TRBV23-1A0A0A0MS06 115 aa6.43□□□□□ -1.38
SS18-223ENST00000583595 FAM83GA6ND36 823 aa6.43□□□□□ -1.38
SS18-223ENST00000583595 RASGRP1O95267 797 aa6.43□□□□□ -1.38
SS18-223ENST00000583595 POLR2BP30876 1174 aaKnown RBP6.43□□□□□ -1.38
SS18-223ENST00000583595 STRN3Q13033 797 aa6.43□□□□□ -1.38
SS18-223ENST00000583595 UBE4AQ14139 1066 aa6.43□□□□□ -1.38
SS18-223ENST00000583595 PCBP1Q15365 356 aaKnown RBP eCLIP6.43□□□□□ -1.38
SS18-223ENST00000583595 WWC2Q6AWC2 1192 aa6.43□□□□□ -1.38
SS18-223ENST00000583595 MFSD2AQ8NA29 543 aa6.43□□□□□ -1.38
SS18-223ENST00000583595 PI4K2BQ8TCG2 481 aa6.43□□□□□ -1.38
SS18-223ENST00000583595 TPX2Q9ULW0 747 aaKnown RBP6.43□□□□□ -1.38
SS18-223ENST00000583595 TACC3Q9Y6A5 838 aa6.43□□□□□ -1.38
SS18-223ENST00000583595 DNAJC25-GNG10A0A024R161 153 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 TRAV20A0A0B4J274 112 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 EIF3JO75822 258 aaKnown RBP6.42□□□□□ -1.38
SS18-223ENST00000583595 CST3P01034 146 aaPredicted RBP6.42□□□□□ -1.38
SS18-223ENST00000583595 TP53P04637 393 aaPredicted RBP6.42□□□□□ -1.38
SS18-223ENST00000583595 RNASE1P07998 156 aaKnown RBP6.42□□□□□ -1.38
SS18-223ENST00000583595 JUNBP17275 347 aaPredicted RBP6.42□□□□□ -1.38
SS18-223ENST00000583595 ANGEL2Q5VTE6 544 aaKnown RBP6.42□□□□□ -1.38
SS18-223ENST00000583595 PRAMEF13Q5VWM6 474 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 LETMD1Q6P1Q0 360 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 RIN3Q8TB24 985 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 XAGE3Q8WTP9 111 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 ASB11Q8WXH4 323 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 EVI5LQ96CN4 794 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 ASIC4Q96FT7 647 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 IPO9Q96P70 1041 aaKnown RBP6.42□□□□□ -1.38
SS18-223ENST00000583595 CHST12Q9NRB3 414 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 MBNL3Q9NUK0 354 aaKnown RBP6.42□□□□□ -1.38
SS18-223ENST00000583595 SLC5A4Q9NY91 659 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 ADAMTS6Q9UKP5 1117 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 CNTNAP4Q9C0A0 1308 aa6.42□□□□□ -1.38
SS18-223ENST00000583595 ABCC9O60706 1549 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 PRR33A8MZF0 331 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 AKAP10O43572 662 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 CAND2O75155 1236 aa6.41□□□□□ -1.38
SS18-223ENST00000583595 SCGB1D2O95969 90 aa6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms