RNA–Protein interactions for RNA: ENST00000577085.1

SF3B3-215, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 4

Gene SF3B3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-215ENST00000577085 TRERF1Q96PN7 1200 aa18.23■□□□□ 0.51
SF3B3-215ENST00000577085 ZKSCAN3Q9BRR0 538 aa18.23■□□□□ 0.51
SF3B3-215ENST00000577085 KRT23Q9C075 422 aa18.23■□□□□ 0.51
SF3B3-215ENST00000577085 RNF146Q9NTX7 359 aa18.23■□□□□ 0.51
SF3B3-215ENST00000577085 CCPG1Q9ULG6 757 aa18.23■□□□□ 0.51
SF3B3-215ENST00000577085 SYNGAP1Q96PV0 1343 aa18.23■□□□□ 0.51
SF3B3-215ENST00000577085 SLC34A2O95436 690 aa18.22■□□□□ 0.51
SF3B3-215ENST00000577085 AKR1A1P14550 325 aa18.22■□□□□ 0.51
SF3B3-215ENST00000577085 SLC16A2P36021 539 aa18.22■□□□□ 0.51
SF3B3-215ENST00000577085 SNAP25P60880 206 aa18.22■□□□□ 0.51
SF3B3-215ENST00000577085 RASGRP2Q7LDG7 609 aa18.22■□□□□ 0.51
SF3B3-215ENST00000577085 ZNF467Q7Z7K2 595 aaPredicted RBP18.22■□□□□ 0.51
SF3B3-215ENST00000577085 KAT14Q9H8E8 782 aa18.22■□□□□ 0.51
SF3B3-215ENST00000577085 CNNM2Q9H8M5 875 aa18.22■□□□□ 0.51
SF3B3-215ENST00000577085 XPNPEP3Q9NQH7 507 aa18.22■□□□□ 0.51
SF3B3-215ENST00000577085 ZHX1Q9UKY1 873 aaPredicted RBP18.22■□□□□ 0.51
SF3B3-215ENST00000577085 ZMYND8Q9ULU4 1186 aaPredicted RBP18.22■□□□□ 0.51
SF3B3-215ENST00000577085 DNAJC25-GNG10A0A024R161 153 aa18.21■□□□□ 0.51
SF3B3-215ENST00000577085 B4E1Z4 1266 aa18.21■□□□□ 0.51
SF3B3-215ENST00000577085 POTEB2H3BUK9 544 aa18.21■□□□□ 0.51
SF3B3-215ENST00000577085 PDHBP11177 359 aa18.21■□□□□ 0.51
SF3B3-215ENST00000577085 ATN1P54259 1190 aaPredicted RBP18.21■□□□□ 0.51
SF3B3-215ENST00000577085 SYDE2Q5VT97 1194 aa18.21■□□□□ 0.51
SF3B3-215ENST00000577085 RNF180Q86T96 592 aa18.21■□□□□ 0.51
SF3B3-215ENST00000577085 DGKHQ86XP1 1220 aa18.21■□□□□ 0.51
SF3B3-215ENST00000577085 UBAC1Q9BSL1 405 aa18.21■□□□□ 0.51
SF3B3-215ENST00000577085 ZNFX1Q9P2E3 1918 aaKnown RBP18.21■□□□□ 0.51
SF3B3-215ENST00000577085 FRMPD3Q5JV73 1810 aa18.21■□□□□ 0.51
SF3B3-215ENST00000577085 PLXNA1Q9UIW2 1896 aa18.2■□□□□ 0.5
SF3B3-215ENST00000577085 SYN1P17600 705 aa18.2■□□□□ 0.5
SF3B3-215ENST00000577085 TRDNQ13061 729 aa18.2■□□□□ 0.5
SF3B3-215ENST00000577085 LRRC26Q2I0M4 334 aa18.2■□□□□ 0.5
SF3B3-215ENST00000577085 TTBK2Q6IQ55 1244 aa18.2■□□□□ 0.5
SF3B3-215ENST00000577085 MAMDC4Q6UXC1 1216 aa18.2■□□□□ 0.5
SF3B3-215ENST00000577085 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.2■□□□□ 0.5
SF3B3-215ENST00000577085 ZSCAN10Q96SZ4 725 aaPredicted RBP18.2■□□□□ 0.5
SF3B3-215ENST00000577085 RBM27Q9P2N5 1060 aaKnown RBP18.2■□□□□ 0.5
SF3B3-215ENST00000577085 PNMA2Q9UL42 364 aa18.2■□□□□ 0.5
SF3B3-215ENST00000577085 FAM184BQ9ULE4 1060 aa18.2■□□□□ 0.5
SF3B3-215ENST00000577085 ZNF536O15090 1300 aa18.2■□□□□ 0.5
SF3B3-215ENST00000577085 ICAM1P05362 532 aa18.19■□□□□ 0.5
SF3B3-215ENST00000577085 TAL1P17542 331 aaPredicted RBP18.19■□□□□ 0.5
SF3B3-215ENST00000577085 CHMLP26374 656 aa18.19■□□□□ 0.5
SF3B3-215ENST00000577085 GPATCH4Q5T3I0 446 aaKnown RBP18.19■□□□□ 0.5
SF3B3-215ENST00000577085 BTNL9Q6UXG8 535 aa18.19■□□□□ 0.5
SF3B3-215ENST00000577085 NSMFQ6X4W1 530 aa18.19■□□□□ 0.5
SF3B3-215ENST00000577085 RANBP17Q9H2T7 1088 aaKnown RBP18.19■□□□□ 0.5
SF3B3-215ENST00000577085 A1CFQ9NQ94 594 aaKnown RBP18.19■□□□□ 0.5
SF3B3-215ENST00000577085 PRKAG2Q9UGJ0 569 aa18.19■□□□□ 0.5
SF3B3-215ENST00000577085 U3KPZ7 1027 aaPredicted RBP18.19■□□□□ 0.5
SF3B3-215ENST00000577085 LAMA4Q16363 1823 aa18.19■□□□□ 0.5
SF3B3-215ENST00000577085 ZNF865P0CJ78 1059 aaPredicted RBP18.18■□□□□ 0.5
SF3B3-215ENST00000577085 ZNF543Q08ER8 600 aa18.18■□□□□ 0.5
SF3B3-215ENST00000577085 LRRC41Q15345 812 aa18.18■□□□□ 0.5
SF3B3-215ENST00000577085 PNMA1Q8ND90 353 aa18.18■□□□□ 0.5
SF3B3-215ENST00000577085 ABHD16BQ9H3Z7 469 aa18.18■□□□□ 0.5
SF3B3-215ENST00000577085 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.18■□□□□ 0.5
SF3B3-215ENST00000577085 ZSWIM5Q9P217 1185 aa18.18■□□□□ 0.5
SF3B3-215ENST00000577085 ASB14A6NK59 587 aa18.17■□□□□ 0.5
SF3B3-215ENST00000577085 SNAI1O95863 264 aaPredicted RBP18.17■□□□□ 0.5
SF3B3-215ENST00000577085 PGK1P00558 417 aa18.17■□□□□ 0.5
SF3B3-215ENST00000577085 ADCYAP1R1P41586 468 aa18.17■□□□□ 0.5
SF3B3-215ENST00000577085 CNTN2Q02246 1040 aa18.17■□□□□ 0.5
SF3B3-215ENST00000577085 ACVR2BQ13705 512 aa18.17■□□□□ 0.5
SF3B3-215ENST00000577085 ARMCX2Q7L311 632 aa18.17■□□□□ 0.5
SF3B3-215ENST00000577085 CCDC144CPQ8IYA2 1237 aa18.17■□□□□ 0.5
SF3B3-215ENST00000577085 SPC25Q9HBM1 224 aa18.17■□□□□ 0.5
SF3B3-215ENST00000577085 ATP11BQ9Y2G3 1177 aa18.17■□□□□ 0.5
SF3B3-215ENST00000577085 TNKSO95271 1327 aa18.17■□□□□ 0.5
SF3B3-215ENST00000577085 DHX16O60231 1041 aaKnown RBP18.16■□□□□ 0.5
SF3B3-215ENST00000577085 GOLGA8HP0CJ92 632 aa18.16■□□□□ 0.5
SF3B3-215ENST00000577085 MUM1L1Q5H9M0 696 aa18.16■□□□□ 0.5
SF3B3-215ENST00000577085 IFIT1BQ5T764 474 aaKnown RBP18.16■□□□□ 0.5
SF3B3-215ENST00000577085 KIAA1211Q6ZU35 1233 aa18.16■□□□□ 0.5
SF3B3-215ENST00000577085 NOL8Q76FK4 1167 aaKnown RBP18.16■□□□□ 0.5
SF3B3-215ENST00000577085 RALYLQ86SE5 291 aaKnown RBP18.16■□□□□ 0.5
SF3B3-215ENST00000577085 FERMT2Q96AC1 680 aa18.16■□□□□ 0.5
SF3B3-215ENST00000577085 IL25Q9H293 177 aa18.16■□□□□ 0.5
SF3B3-215ENST00000577085 CYP39A1Q9NYL5 469 aa18.16■□□□□ 0.5
SF3B3-215ENST00000577085 ERICH2A1L162 156 aa18.15■□□□□ 0.5
SF3B3-215ENST00000577085 PTPDC1A2A3K4 754 aa18.15■□□□□ 0.5
SF3B3-215ENST00000577085 SNHG28P0DPA3 235 aa18.15■□□□□ 0.5
SF3B3-215ENST00000577085 RTP1P59025 263 aa18.15■□□□□ 0.5
SF3B3-215ENST00000577085 CCDC144BQ3MJ40 725 aa18.15■□□□□ 0.5
SF3B3-215ENST00000577085 CENPQQ7L2Z9 268 aaPredicted RBP18.15■□□□□ 0.5
SF3B3-215ENST00000577085 ENAHQ8N8S7 591 aaPredicted RBP18.15■□□□□ 0.5
SF3B3-215ENST00000577085 FAM133AQ8N9E0 248 aa18.15■□□□□ 0.5
SF3B3-215ENST00000577085 LENG1Q96BZ8 264 aaPredicted RBP18.15■□□□□ 0.5
SF3B3-215ENST00000577085 LBHD1Q9BQE6 289 aaPredicted RBP18.15■□□□□ 0.5
SF3B3-215ENST00000577085 ALPK3Q96L96 1907 aa18.15■□□□□ 0.5
SF3B3-215ENST00000577085 A0A1W2PPC1 479 aa18.14■□□□□ 0.49
SF3B3-215ENST00000577085 SGSM2O43147 1006 aa18.14■□□□□ 0.49
SF3B3-215ENST00000577085 DUSP11O75319 330 aaKnown RBP18.14■□□□□ 0.49
SF3B3-215ENST00000577085 PARP1P09874 1014 aaKnown RBP18.14■□□□□ 0.49
SF3B3-215ENST00000577085 MAGEA10P43363 369 aaPredicted RBP18.14■□□□□ 0.49
SF3B3-215ENST00000577085 FXR1P51114 621 aaKnown RBP eCLIP18.14■□□□□ 0.49
SF3B3-215ENST00000577085 ASPRV1Q53RT3 343 aa18.14■□□□□ 0.49
SF3B3-215ENST00000577085 SLC39A5Q6ZMH5 540 aa18.14■□□□□ 0.49
SF3B3-215ENST00000577085 ANKS1AQ92625 1134 aa18.14■□□□□ 0.49
SF3B3-215ENST00000577085 MPHOSPH6Q99547 160 aaKnown RBP18.14■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms