RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	REXO2	Q9Y3B8	237 aa	Known RBP	16.63	■□□□□ 0.25
PRPF8-216	ENST00000577001	CAPN2	P17655	700 aa		16.63	■□□□□ 0.25
PRPF8-216	ENST00000577001	UBE2S	Q16763	222 aa		16.63	■□□□□ 0.25
PRPF8-216	ENST00000577001	IRF2BP1	Q8IU81	584 aa		16.63	■□□□□ 0.25
PRPF8-216	ENST00000577001	GPR161	Q8N6U8	529 aa	Known RBP	16.63	■□□□□ 0.25
PRPF8-216	ENST00000577001	ANKRD20A12P	Q8NF67	263 aa		16.63	■□□□□ 0.25
PRPF8-216	ENST00000577001	PIGS	Q96S52	555 aa		16.63	■□□□□ 0.25
PRPF8-216	ENST00000577001	MAGEC2	Q9UBF1	373 aa	Predicted RBP	16.63	■□□□□ 0.25
PRPF8-216	ENST00000577001	CDC23	Q9UJX2	597 aa		16.63	■□□□□ 0.25
PRPF8-216	ENST00000577001	MYO1B	O43795	1136 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	CACNB3	P54284	484 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	ATP2C1	P98194	919 aa	Predicted RBP	16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	SHROOM1	Q2M3G4	852 aa	Predicted RBP	16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	PDXDC2P	Q6P474	469 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	PLCD3	Q8N3E9	789 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	NAPG	Q99747	312 aa	Predicted RBP	16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	UTP3	Q9NQZ2	479 aa	Known RBP eCLIP	16.62	■□□□□ 0.25	2e-6	■■■■■ 60.2
PRPF8-216	ENST00000577001	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	BCS1L	Q9Y276	419 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	KLRF2	D3W0D1	207 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	EPHB6	O15197	1021 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	CCDC96	Q2M329	555 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	EHD4	Q9H223	541 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	PNPLA7	Q6ZV29	1317 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	COL18A1	P39060	1754 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	MPHOSPH10	O00566	681 aa	Known RBP	16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	ERCC5	P28715	1186 aa	Predicted RBP	16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	TNNI2	P48788	182 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	IRX5	P78411	483 aa	Predicted RBP	16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	ANKRD40	Q6AI12	368 aa		16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	BBX	Q8WY36	941 aa	Predicted RBP	16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	ZNF512B	Q96KM6	892 aa	Predicted RBP	16.62	■□□□□ 0.25
PRPF8-216	ENST00000577001	LRRIQ3	A6PVS8	624 aa	Predicted RBP	16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	GLI3	P10071	1580 aa		16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	NAALADL2	Q58DX5	795 aa		16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	HDAC7	Q8WUI4	952 aa		16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	GSDMA	Q96QA5	445 aa		16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	NUDT12	Q9BQG2	462 aa		16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	GOLPH3	Q9H4A6	298 aa		16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	RSPH14	Q9UHP6	348 aa		16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	PACSIN2	Q9UNF0	486 aa	Predicted RBP	16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	CDKAL1	Q5VV42	579 aa		16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	RSRC2	Q7L4I2	434 aa	Known RBP	16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	POTED	Q86YR6	584 aa		16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	LRWD1	Q9UFC0	647 aa		16.61	■□□□□ 0.25
PRPF8-216	ENST00000577001	SMCO2	A6NFE2	343 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	NDUFA10	O95299	355 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	LDHB	P07195	334 aa	Known RBP	16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	MYBL2	P10244	700 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	ARHGAP25	P42331	645 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	SCNN1D	P51172	638 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	C2CD5	Q86YS7	1000 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	TMEM47	Q9BQJ4	181 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	MYO6	Q9UM54	1294 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	FAM237A	A0A1B0GTK4	181 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	E2F4	Q16254	413 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	CNGA4	Q8IV77	575 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	TUBGCP2	Q9BSJ2	902 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	NOC4L	Q9BVI4	516 aa	Known RBP	16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	PCDHA6	Q9UN73	950 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	PCDHA8	Q9Y5H6	950 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	ZNF804B	A4D1E1	1349 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	USP17L5	A8MUK1	530 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	C6orf229	H3BNL8	230 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	CYP2C19	P33261	490 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	NT5DC1	Q5TFE4	455 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	FERMT2	Q96AC1	680 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	DEF6	Q9H4E7	631 aa		16.6	■□□□□ 0.25
PRPF8-216	ENST00000577001	TNS2	Q63HR2	1409 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	NPHP3-ACAD11	A0A0J9YXS1	232 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	ESYT3	A0FGR9	886 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	MOCS3	O95396	460 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	TDP2	O95551	362 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	PFKFB3	Q16875	520 aa	Predicted RBP	16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	CABP7	Q86V35	215 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	CERS3	Q8IU89	383 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	NOC3L	Q8WTT2	800 aa	Known RBP	16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	DISC1	Q9NRI5	854 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	MYH8	P13535	1937 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	GTPBP6	O43824	516 aa	Predicted RBP	16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	IBSP	P21815	317 aa	Predicted RBP	16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	ZSCAN26	Q16670	478 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	CYP26C1	Q6V0L0	522 aa		16.59	■□□□□ 0.25
PRPF8-216	ENST00000577001	PDE2A	O00408	941 aa	Predicted RBP	16.58	■□□□□ 0.25
PRPF8-216	ENST00000577001	SH3RF1	Q7Z6J0	888 aa		16.58	■□□□□ 0.25
PRPF8-216	ENST00000577001	ZNF579	Q8NAF0	562 aa	Known RBP	16.58	■□□□□ 0.25
PRPF8-216	ENST00000577001	TBCK	Q8TEA7	893 aa		16.58	■□□□□ 0.25
PRPF8-216	ENST00000577001	RABGGTA	Q92696	567 aa		16.58	■□□□□ 0.25
PRPF8-216	ENST00000577001	TNFRSF25	Q93038	417 aa		16.58	■□□□□ 0.25
PRPF8-216	ENST00000577001	BCAS3	Q9H6U6	928 aa		16.58	■□□□□ 0.25
PRPF8-216	ENST00000577001	HERVK_113	P62684	666 aa		16.58	■□□□□ 0.24
PRPF8-216	ENST00000577001	PARP10	Q53GL7	1025 aa		16.58	■□□□□ 0.24
PRPF8-216	ENST00000577001	TDRD12	Q587J7	1177 aa	Known RBP	16.58	■□□□□ 0.24
PRPF8-216	ENST00000577001	TTBK2	Q6IQ55	1244 aa		16.58	■□□□□ 0.24
PRPF8-216	ENST00000577001	MB21D1	Q8N884	522 aa		16.58	■□□□□ 0.24
PRPF8-216	ENST00000577001	JAKMIP2	Q96AA8	810 aa		16.58	■□□□□ 0.24
PRPF8-216	ENST00000577001	NGLY1	Q96IV0	654 aa		16.58	■□□□□ 0.24
PRPF8-216	ENST00000577001	MS4A14	Q96JA4	679 aa		16.58	■□□□□ 0.24
PRPF8-216	ENST00000577001	CNOT6L	Q96LI5	555 aa	Known RBP	16.58	■□□□□ 0.24
PRPF8-216	ENST00000577001	PANX2	Q96RD6	677 aa		16.58	■□□□□ 0.24

Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms