RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TLR9Q9NR96 1032 aa19.98■□□□□ 0.79
VPS53-218ENST00000575207 AATFQ9NY61 560 aaKnown RBP eCLIP19.98■□□□□ 0.79
VPS53-218ENST00000575207 RAI14Q9P0K7 980 aa19.98■□□□□ 0.79
VPS53-218ENST00000575207 AVPR2P30518 371 aa19.97■□□□□ 0.79
VPS53-218ENST00000575207 GUCY1A2P33402 732 aa19.97■□□□□ 0.79
VPS53-218ENST00000575207 NUBP1P53384 320 aa19.97■□□□□ 0.79
VPS53-218ENST00000575207 VCPP55072 806 aaKnown RBP19.97■□□□□ 0.79
VPS53-218ENST00000575207 CCDC144BQ3MJ40 725 aa19.97■□□□□ 0.79
VPS53-218ENST00000575207 CERKLQ49MI3 558 aaPredicted RBP19.97■□□□□ 0.79
VPS53-218ENST00000575207 TBC1D9Q6ZT07 1266 aa19.97■□□□□ 0.79
VPS53-218ENST00000575207 MTUS1Q9ULD2 1270 aa19.97■□□□□ 0.79
VPS53-218ENST00000575207 SCN5AQ14524 2016 aa19.97■□□□□ 0.79
VPS53-218ENST00000575207 A0A1W2PRG0 241 aa19.96■□□□□ 0.79
VPS53-218ENST00000575207 BAIAP3O94812 1187 aa19.96■□□□□ 0.79
VPS53-218ENST00000575207 BEX3Q00994 111 aa19.96■□□□□ 0.79
VPS53-218ENST00000575207 ABHD16BQ9H3Z7 469 aa19.96■□□□□ 0.79
VPS53-218ENST00000575207 CABP5Q9NP86 173 aa19.96■□□□□ 0.79
VPS53-218ENST00000575207 HMG20BQ9P0W2 317 aa19.96■□□□□ 0.79
VPS53-218ENST00000575207 SAP30BPQ9UHR5 308 aaKnown RBP19.96■□□□□ 0.79
VPS53-218ENST00000575207 ADAMTS5Q9UNA0 930 aa19.96■□□□□ 0.79
VPS53-218ENST00000575207 TNKSO95271 1327 aa19.96■□□□□ 0.79
VPS53-218ENST00000575207 FOCADQ5VW36 1801 aa19.95■□□□□ 0.78
VPS53-218ENST00000575207 FLOT1O75955 427 aa19.95■□□□□ 0.78
VPS53-218ENST00000575207 ZNF467Q7Z7K2 595 aaPredicted RBP19.95■□□□□ 0.78
VPS53-218ENST00000575207 MRPL38Q96DV4 380 aaKnown RBP19.95■□□□□ 0.78
VPS53-218ENST00000575207 ALDH8A1Q9H2A2 487 aaPredicted RBP19.95■□□□□ 0.78
VPS53-218ENST00000575207 CTNNA3Q9UI47 895 aa19.95■□□□□ 0.78
VPS53-218ENST00000575207 IL15P40933 162 aaPredicted RBP19.94■□□□□ 0.78
VPS53-218ENST00000575207 TIMM10P62072 90 aa19.94■□□□□ 0.78
VPS53-218ENST00000575207 ZXDAP98168 799 aa19.94■□□□□ 0.78
VPS53-218ENST00000575207 EHD4Q9H223 541 aa19.94■□□□□ 0.78
VPS53-218ENST00000575207 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.94■□□□□ 0.78
VPS53-218ENST00000575207 SERPINB13Q9UIV8 391 aa19.94■□□□□ 0.78
VPS53-218ENST00000575207 IL16Q14005 1332 aa19.94■□□□□ 0.78
VPS53-218ENST00000575207 EP300Q09472 2414 aaPredicted RBP19.94■□□□□ 0.78
VPS53-218ENST00000575207 TET1Q8NFU7 2136 aa19.93■□□□□ 0.78
VPS53-218ENST00000575207 DNAJC25-GNG10A0A024R161 153 aa19.93■□□□□ 0.78
VPS53-218ENST00000575207 LINC01553A4QN01 128 aa19.93■□□□□ 0.78
VPS53-218ENST00000575207 SUPT20HL2P0C7V6 817 aa19.93■□□□□ 0.78
VPS53-218ENST00000575207 COPB2P35606 906 aa19.93■□□□□ 0.78
VPS53-218ENST00000575207 KIAA1755Q5JYT7 1200 aa19.93■□□□□ 0.78
VPS53-218ENST00000575207 MAGEB6Q8N7X4 407 aa19.93■□□□□ 0.78
VPS53-218ENST00000575207 SPATA5Q8NB90 893 aa19.93■□□□□ 0.78
VPS53-218ENST00000575207 SIP14410 1827 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 PTPRSQ13332 1948 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 CYP2C9P11712 490 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 STAT3P40763 770 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 CCDC27Q2M243 656 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 TIGD5Q53EQ6 642 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 PI16Q6UXB8 463 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 DGLUCYQ7Z3D6 616 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 RAD9AQ99638 391 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 ASTN1O14525 1302 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 FANCIQ9NVI1 1328 aa19.92■□□□□ 0.78
VPS53-218ENST00000575207 A0A1B0GUL7 405 aa19.91■□□□□ 0.78
VPS53-218ENST00000575207 KCNJ6P48051 423 aa19.91■□□□□ 0.78
VPS53-218ENST00000575207 MVPQ14764 893 aaKnown RBP19.91■□□□□ 0.78
VPS53-218ENST00000575207 SEPT2Q15019 361 aa19.91■□□□□ 0.78
VPS53-218ENST00000575207 WWC1Q8IX03 1113 aa19.91■□□□□ 0.78
VPS53-218ENST00000575207 ADSSL1Q8N142 457 aa19.91■□□□□ 0.78
VPS53-218ENST00000575207 XAGE2Q96GT9 111 aa19.91■□□□□ 0.78
VPS53-218ENST00000575207 ZBED2Q9BTP6 218 aa19.91■□□□□ 0.78
VPS53-218ENST00000575207 FTOQ9C0B1 505 aaKnown RBP eCLIP19.91■□□□□ 0.78
VPS53-218ENST00000575207 USP44Q9H0E7 712 aa19.91■□□□□ 0.78
VPS53-218ENST00000575207 IQCF3P0C7M6 154 aa19.9■□□□□ 0.78
VPS53-218ENST00000575207 LTBRP36941 435 aa19.9■□□□□ 0.78
VPS53-218ENST00000575207 WDR5P61964 334 aaKnown RBP19.9■□□□□ 0.78
VPS53-218ENST00000575207 PTPROQ16827 1216 aa19.9■□□□□ 0.78
VPS53-218ENST00000575207 BANK1Q8NDB2 785 aa19.9■□□□□ 0.78
VPS53-218ENST00000575207 COL26A1Q96A83 441 aa19.9■□□□□ 0.78
VPS53-218ENST00000575207 RMDN1Q96DB5 314 aa19.9■□□□□ 0.78
VPS53-218ENST00000575207 KATNBL1Q9H079 304 aa19.9■□□□□ 0.78
VPS53-218ENST00000575207 TRMT13Q9NUP7 481 aaKnown RBP19.9■□□□□ 0.78
VPS53-218ENST00000575207 LRP2BPQ9P2M1 347 aa19.9■□□□□ 0.78
VPS53-218ENST00000575207 ZNF214Q9UL59 606 aaPredicted RBP19.9■□□□□ 0.78
VPS53-218ENST00000575207 PITPNM1O00562 1244 aa19.89■□□□□ 0.77
VPS53-218ENST00000575207 MBTPS2O43462 519 aa19.89■□□□□ 0.77
VPS53-218ENST00000575207 GALR2O43603 387 aaPredicted RBP19.89■□□□□ 0.77
VPS53-218ENST00000575207 GJB5O95377 273 aa19.89■□□□□ 0.77
VPS53-218ENST00000575207 SHMT1P34896 483 aa19.89■□□□□ 0.77
VPS53-218ENST00000575207 PSMC6P62333 389 aa19.89■□□□□ 0.77
VPS53-218ENST00000575207 SIGLEC14Q08ET2 396 aa19.89■□□□□ 0.77
VPS53-218ENST00000575207 FSCN1Q16658 493 aaKnown RBP19.89■□□□□ 0.77
VPS53-218ENST00000575207 TCEAL5Q5H9L2 206 aa19.89■□□□□ 0.77
VPS53-218ENST00000575207 NAA16Q6N069 864 aaPredicted RBP19.89■□□□□ 0.77
VPS53-218ENST00000575207 EP400NLQ6ZTU2 488 aa19.89■□□□□ 0.77
VPS53-218ENST00000575207 TMCO2Q7Z6W1 182 aaPredicted RBP19.89■□□□□ 0.77
VPS53-218ENST00000575207 NKD2Q969F2 451 aaPredicted RBP19.89■□□□□ 0.77
VPS53-218ENST00000575207 ASIC4Q96FT7 647 aa19.89■□□□□ 0.77
VPS53-218ENST00000575207 GNEQ9Y223 722 aaKnown RBP19.89■□□□□ 0.77
VPS53-218ENST00000575207 COL11A1P12107 1806 aaPredicted RBP19.88■□□□□ 0.77
VPS53-218ENST00000575207 PARP14Q460N5 1801 aa19.88■□□□□ 0.77
VPS53-218ENST00000575207 NBPF20Q3BBV1 942 aa19.88■□□□□ 0.77
VPS53-218ENST00000575207 ADGRA1Q86SQ6 560 aa19.88■□□□□ 0.77
VPS53-218ENST00000575207 FBXO22Q8NEZ5 403 aa19.88■□□□□ 0.77
VPS53-218ENST00000575207 DDX11Q96FC9 970 aa19.88■□□□□ 0.77
VPS53-218ENST00000575207 CLDND1Q9NY35 253 aa19.88■□□□□ 0.77
VPS53-218ENST00000575207 STXBP3O00186 592 aa19.87■□□□□ 0.77
VPS53-218ENST00000575207 NCK2O43639 380 aa19.87■□□□□ 0.77
VPS53-218ENST00000575207 ZEB2O60315 1214 aa19.87■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms