RNA–Protein interactions for RNA: ENST00000572579.1

CHD3-214, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 931 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-214ENST00000572579 HOMER2Q9NSB8 354 aa21.46■■□□□ 1.03
CHD3-214ENST00000572579 DDX49Q9Y6V7 483 aaKnown RBP21.46■■□□□ 1.03
CHD3-214ENST00000572579 SYNGAP1Q96PV0 1343 aa21.46■■□□□ 1.03
CHD3-214ENST00000572579 MYADML2A6NDP7 307 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 PLA2G6O60733 806 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 SDSP20132 328 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 ITGB8P26012 769 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 STAT2P52630 851 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 HAND2P61296 217 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 C1orf53Q5VUE5 145 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 ZNF467Q7Z7K2 595 aaPredicted RBP21.45■■□□□ 1.02
CHD3-214ENST00000572579 TICAM2Q86XR7 235 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 FAM133AQ8N9E0 248 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 KLHDC9Q8NEP7 349 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 RILPL2Q969X0 211 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 PRR12Q9ULL5 1215 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 ASTN1O14525 1302 aa21.45■■□□□ 1.02
CHD3-214ENST00000572579 SOWAHBA6NEL2 793 aa21.44■■□□□ 1.02
CHD3-214ENST00000572579 TRIM6-TRIM34B2RNG4 842 aa21.44■■□□□ 1.02
CHD3-214ENST00000572579 AKR1A1P14550 325 aa21.44■■□□□ 1.02
CHD3-214ENST00000572579 FAM160B2Q86V87 743 aa21.44■■□□□ 1.02
CHD3-214ENST00000572579 TBC1D10CQ8IV04 446 aa21.44■■□□□ 1.02
CHD3-214ENST00000572579 ANKRD35Q8N283 1001 aa21.44■■□□□ 1.02
CHD3-214ENST00000572579 CHURC1Q8WUH1 139 aa21.44■■□□□ 1.02
CHD3-214ENST00000572579 TMEM47Q9BQJ4 181 aa21.44■■□□□ 1.02
CHD3-214ENST00000572579 A1CFQ9NQ94 594 aaKnown RBP21.44■■□□□ 1.02
CHD3-214ENST00000572579 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.44■■□□□ 1.02
CHD3-214ENST00000572579 CNPY2Q9Y2B0 182 aa21.44■■□□□ 1.02
CHD3-214ENST00000572579 TLE2Q04725 743 aa21.43■■□□□ 1.02
CHD3-214ENST00000572579 ACVR2BQ13705 512 aa21.43■■□□□ 1.02
CHD3-214ENST00000572579 MUM1L1Q5H9M0 696 aa21.43■■□□□ 1.02
CHD3-214ENST00000572579 Q7L0L9 218 aa21.43■■□□□ 1.02
CHD3-214ENST00000572579 PURBQ96QR8 312 aaKnown RBP21.43■■□□□ 1.02
CHD3-214ENST00000572579 PDLIM7Q9NR12 457 aa21.43■■□□□ 1.02
CHD3-214ENST00000572579 TCP11L1Q9NUJ3 509 aa21.43■■□□□ 1.02
CHD3-214ENST00000572579 FBXO40Q9UH90 709 aa21.43■■□□□ 1.02
CHD3-214ENST00000572579 ZHX1Q9UKY1 873 aaPredicted RBP21.43■■□□□ 1.02
CHD3-214ENST00000572579 MTMR7Q9Y216 660 aa21.43■■□□□ 1.02
CHD3-214ENST00000572579 CTDP1Q9Y5B0 961 aaPredicted RBP21.43■■□□□ 1.02
CHD3-214ENST00000572579 CCDC171Q6TFL3 1326 aa21.43■■□□□ 1.02
CHD3-214ENST00000572579 MYH4Q9Y623 1939 aa21.43■■□□□ 1.02
CHD3-214ENST00000572579 PTGS1P23219 599 aa21.42■■□□□ 1.02
CHD3-214ENST00000572579 SLC16A2P36021 539 aa21.42■■□□□ 1.02
CHD3-214ENST00000572579 RRP12Q5JTH9 1297 aaKnown RBP21.42■■□□□ 1.02
CHD3-214ENST00000572579 CCDC174Q6PII3 467 aa21.42■■□□□ 1.02
CHD3-214ENST00000572579 ARMCX2Q7L311 632 aa21.42■■□□□ 1.02
CHD3-214ENST00000572579 CCDC144CPQ8IYA2 1237 aa21.42■■□□□ 1.02
CHD3-214ENST00000572579 RNF146Q9NTX7 359 aa21.42■■□□□ 1.02
CHD3-214ENST00000572579 FAM184BQ9ULE4 1060 aa21.42■■□□□ 1.02
CHD3-214ENST00000572579 ISY1Q9ULR0 285 aaKnown RBP21.42■■□□□ 1.02
CHD3-214ENST00000572579 SYNRGQ9UMZ2 1314 aa21.42■■□□□ 1.02
CHD3-214ENST00000572579 ZMYM6O95789 1325 aa21.41■■□□□ 1.02
CHD3-214ENST00000572579 A0A1W2PQ45 241 aaPredicted RBP21.41■■□□□ 1.02
CHD3-214ENST00000572579 A0A1W2PQY0 241 aa21.41■■□□□ 1.02
CHD3-214ENST00000572579 CTAGE5O15320 804 aa21.41■■□□□ 1.02
CHD3-214ENST00000572579 FDX1P10109 184 aa21.41■■□□□ 1.02
CHD3-214ENST00000572579 RNF180Q86T96 592 aa21.41■■□□□ 1.02
CHD3-214ENST00000572579 TRERF1Q96PN7 1200 aa21.41■■□□□ 1.02
CHD3-214ENST00000572579 ACAD9Q9H845 621 aa21.41■■□□□ 1.02
CHD3-214ENST00000572579 ALAS1P13196 640 aa21.4■■□□□ 1.02
CHD3-214ENST00000572579 IKQ13123 557 aaPredicted RBP21.4■■□□□ 1.02
CHD3-214ENST00000572579 KCNA10Q16322 511 aa21.4■■□□□ 1.02
CHD3-214ENST00000572579 CCDC144BQ3MJ40 725 aa21.4■■□□□ 1.02
CHD3-214ENST00000572579 PPP4R3BQ5MIZ7 849 aa21.4■■□□□ 1.02
CHD3-214ENST00000572579 BTNL9Q6UXG8 535 aa21.4■■□□□ 1.02
CHD3-214ENST00000572579 BADQ92934 168 aa21.4■■□□□ 1.02
CHD3-214ENST00000572579 IL25Q9H293 177 aa21.4■■□□□ 1.02
CHD3-214ENST00000572579 FRMPD2Q68DX3 1309 aaPredicted RBP21.39■■□□□ 1.01
CHD3-214ENST00000572579 C11orf97A0A1B0GVM6 126 aaPredicted RBP21.39■■□□□ 1.01
CHD3-214ENST00000572579 DUSP11O75319 330 aaKnown RBP21.39■■□□□ 1.01
CHD3-214ENST00000572579 TOP1P11387 765 aaKnown RBP21.39■■□□□ 1.01
CHD3-214ENST00000572579 PDE4AP27815 886 aa21.39■■□□□ 1.01
CHD3-214ENST00000572579 ACLYP53396 1101 aa21.39■■□□□ 1.01
CHD3-214ENST00000572579 C9orf50Q5SZB4 431 aa21.39■■□□□ 1.01
CHD3-214ENST00000572579 AKNAD1Q5T1N1 836 aa21.39■■□□□ 1.01
CHD3-214ENST00000572579 TMEM63BQ5T3F8 832 aa21.39■■□□□ 1.01
CHD3-214ENST00000572579 GPR153Q6NV75 609 aa21.39■■□□□ 1.01
CHD3-214ENST00000572579 DCAF4Q8WV16 495 aa21.39■■□□□ 1.01
CHD3-214ENST00000572579 TSEN34Q9BSV6 310 aaKnown RBP21.39■■□□□ 1.01
CHD3-214ENST00000572579 RANBP17Q9H2T7 1088 aaKnown RBP21.39■■□□□ 1.01
CHD3-214ENST00000572579 ABHD16BQ9H3Z7 469 aa21.39■■□□□ 1.01
CHD3-214ENST00000572579 PRDM5Q9NQX1 630 aaPredicted RBP21.39■■□□□ 1.01
CHD3-214ENST00000572579 TOMM22Q9NS69 142 aa21.39■■□□□ 1.01
CHD3-214ENST00000572579 SUPT16HQ9Y5B9 1047 aaKnown RBP21.39■■□□□ 1.01
CHD3-214ENST00000572579 NEDD4P46934 1319 aa21.38■■□□□ 1.01
CHD3-214ENST00000572579 POTEB2H3BUK9 544 aa21.38■■□□□ 1.01
CHD3-214ENST00000572579 SHHQ15465 462 aa21.38■■□□□ 1.01
CHD3-214ENST00000572579 CWC27Q6UX04 472 aaKnown RBP21.38■■□□□ 1.01
CHD3-214ENST00000572579 LBHD1Q9BQE6 289 aaPredicted RBP21.38■■□□□ 1.01
CHD3-214ENST00000572579 UPF3AQ9H1J1 476 aaKnown RBP21.38■■□□□ 1.01
CHD3-214ENST00000572579 GPCPD1Q9NPB8 672 aa21.38■■□□□ 1.01
CHD3-214ENST00000572579 CYP39A1Q9NYL5 469 aa21.38■■□□□ 1.01
CHD3-214ENST00000572579 PLXNA1Q9UIW2 1896 aa21.38■■□□□ 1.01
CHD3-214ENST00000572579 A0A0C4DFX4 3053 aa21.38■■□□□ 1.01
CHD3-214ENST00000572579 PDHBP11177 359 aa21.37■■□□□ 1.01
CHD3-214ENST00000572579 EPHB4P54760 987 aa21.37■■□□□ 1.01
CHD3-214ENST00000572579 CCDC96Q2M329 555 aa21.37■■□□□ 1.01
CHD3-214ENST00000572579 TKFCQ3LXA3 575 aa21.37■■□□□ 1.01
CHD3-214ENST00000572579 DEFB123Q8N688 67 aa21.37■■□□□ 1.01
CHD3-214ENST00000572579 PDGFCQ9NRA1 345 aa21.37■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms