RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 BTG4Q9NY30 223 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 BCORQ6W2J9 1755 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 ATP1A1P05023 1023 aaKnown RBP12.04□□□□□ -0.48
CCDC40-207ENST00000572253 ZBED6P86452 979 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 MMS19Q96T76 1030 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 TUBGCP2Q9BSJ2 902 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 CUEDC2Q9H467 287 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 ARPP21Q9UBL0 812 aaPredicted RBP12.04□□□□□ -0.48
CCDC40-207ENST00000572253 HDAC6Q9UBN7 1215 aa12.04□□□□□ -0.48
CCDC40-207ENST00000572253 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.04□□□□□ -0.48
CCDC40-207ENST00000572253 SMIM22K7EJ46 135 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 SRGNP10124 158 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 AARSP49588 968 aaKnown RBP eCLIP12.03□□□□□ -0.48
CCDC40-207ENST00000572253 IL17AQ16552 155 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 GALNT17Q6IS24 598 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 ATP8A2Q9NTI2 1148 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 RSPH14Q9UHP6 348 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 DUOX1Q9NRD9 1551 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 B4DLN1 442 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 LAD1O00515 517 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 IDEP14735 1019 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 HERVK_113P62684 666 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 CCDC178Q5BJE1 867 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 PLCH1Q4KWH8 1693 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 EIF3CLB5ME19 914 aaKnown RBP12.03□□□□□ -0.48
CCDC40-207ENST00000572253 TACC1O75410 805 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 RHOBTB3O94955 611 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 AMPD3Q01432 767 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 IRF2BP1Q8IU81 584 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 SECISBP2LQ93073 1101 aaKnown RBP12.03□□□□□ -0.48
CCDC40-207ENST00000572253 CCDC42Q96M95 316 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 EIF3CQ99613 913 aaKnown RBP12.03□□□□□ -0.48
CCDC40-207ENST00000572253 MYH2Q9UKX2 1941 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 MEA1Q16626 185 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 AMOTL1Q8IY63 956 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 ZNF507Q8TCN5 953 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 COG1Q8WTW3 980 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 CCSER1Q9C0I3 900 aa12.03□□□□□ -0.48
CCDC40-207ENST00000572253 NHEJ1Q9H9Q4 299 aaPredicted RBP12.03□□□□□ -0.48
CCDC40-207ENST00000572253 NUTM2BA6NNL0 878 aaPredicted RBP12.02□□□□□ -0.48
CCDC40-207ENST00000572253 NUTM2EB1AL46 878 aaPredicted RBP12.02□□□□□ -0.48
CCDC40-207ENST00000572253 NMT2O60551 498 aa12.02□□□□□ -0.48
CCDC40-207ENST00000572253 NTSR2O95665 410 aa12.02□□□□□ -0.48
CCDC40-207ENST00000572253 CCNE1P24864 410 aa12.02□□□□□ -0.48
CCDC40-207ENST00000572253 PDE4CQ08493 712 aa12.02□□□□□ -0.48
CCDC40-207ENST00000572253 FNBP4Q8N3X1 1017 aaPredicted RBP12.02□□□□□ -0.48
CCDC40-207ENST00000572253 GIMAP8Q8ND71 665 aaPredicted RBP12.02□□□□□ -0.48
CCDC40-207ENST00000572253 GPKOWQ92917 476 aaPredicted RBP eCLIP12.02□□□□□ -0.48
CCDC40-207ENST00000572253 NOC4LQ9BVI4 516 aaKnown RBP12.02□□□□□ -0.48
CCDC40-207ENST00000572253 HPCAL4Q9UM19 191 aa12.02□□□□□ -0.48
CCDC40-207ENST00000572253 ATP6V1AP38606 617 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 CRKLP46109 303 aaKnown RBP12.02□□□□□ -0.49
CCDC40-207ENST00000572253 NT5C2P49902 561 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 P2RX5Q93086 422 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 SRGAP2O75044 1071 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 ASIC1P78348 528 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 PDE4DQ08499 809 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 CCDC96Q2M329 555 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 TRIM58Q8NG06 486 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 PLIN2Q99541 437 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 FAM107BQ9H098 131 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 DEF6Q9H4E7 631 aa12.02□□□□□ -0.49
CCDC40-207ENST00000572253 DCP1AQ9NPI6 582 aaPredicted RBP12.02□□□□□ -0.49
CCDC40-207ENST00000572253 MACROD2A1Z1Q3 448 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 C4orf32Q8N8J7 132 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 FAM76AQ8TAV0 307 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 ZFP91Q96JP5 570 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-207ENST00000572253 CNOT6LQ96LI5 555 aaKnown RBP12.01□□□□□ -0.49
CCDC40-207ENST00000572253 BAZ2BQ9UIF8 2168 aaKnown RBP12.01□□□□□ -0.49
CCDC40-207ENST00000572253 PPFIA4O75335 1185 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 CAMTA2O94983 1202 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 VAV2P52735 878 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 TTI2Q6NXR4 508 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 WDR59Q6PJI9 974 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 HEATR3Q7Z4Q2 680 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 CABP7Q86V35 215 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 RASGRP4Q8TDF6 673 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 AK8Q96MA6 479 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 ALS2CR12Q96Q35 445 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 TRIM66O15016 1216 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 INF2Q27J81 1249 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 SBK1Q52WX2 424 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 CCDC181Q5TID7 509 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 PNMA1Q8ND90 353 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 KBTBD4Q9NVX7 518 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 BSDC1Q9NW68 430 aaPredicted RBP12.01□□□□□ -0.49
CCDC40-207ENST00000572253 LCMT1Q9UIC8 334 aa12.01□□□□□ -0.49
CCDC40-207ENST00000572253 FGFR1OPO95684 399 aaKnown RBP12□□□□□ -0.49
CCDC40-207ENST00000572253 PRPHP41219 470 aa12□□□□□ -0.49
CCDC40-207ENST00000572253 PMS1P54277 932 aaKnown RBP12□□□□□ -0.49
CCDC40-207ENST00000572253 DGKHQ86XP1 1220 aa12□□□□□ -0.49
CCDC40-207ENST00000572253 RUFY1Q96T51 708 aa12□□□□□ -0.49
CCDC40-207ENST00000572253 MCM9Q9NXL9 1143 aa12□□□□□ -0.49
CCDC40-207ENST00000572253 GOLGA6BA6NDN3 693 aa12□□□□□ -0.49
CCDC40-207ENST00000572253 CDK17Q00537 523 aa12□□□□□ -0.49
CCDC40-207ENST00000572253 MECOMQ03112 1051 aa12□□□□□ -0.49
CCDC40-207ENST00000572253 CNNM4Q6P4Q7 775 aa12□□□□□ -0.49
CCDC40-207ENST00000572253 INTS5Q6P9B9 1019 aaKnown RBP12□□□□□ -0.49
CCDC40-207ENST00000572253 RUBCNQ92622 972 aa12□□□□□ -0.49
CCDC40-207ENST00000572253 NSUN4Q96CB9 384 aaKnown RBP12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms