RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 hCG_1642624A0A1W2PR95 340 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 ADAMTS3O15072 1205 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 FOXN1O15353 648 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 PPFIA3O75145 1194 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 IFNAR1P17181 557 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 OSBPP22059 807 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 GCLCP48506 637 aaPredicted RBP10.81□□□□□ -0.68
VPS35-211ENST00000569950 METAP2P50579 478 aaKnown RBP eCLIP10.81□□□□□ -0.68
VPS35-211ENST00000569950 ERVK-9P63128 1117 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 ERVK-24P63145 666 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 MAP2K1Q02750 393 aaPredicted RBP10.81□□□□□ -0.68
VPS35-211ENST00000569950 STK3Q13188 491 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 ANKRD1Q15327 319 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 FAM110CQ1W6H9 321 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 QRICH1Q2TAL8 776 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 NOM1Q5C9Z4 860 aaKnown RBP10.81□□□□□ -0.68
VPS35-211ENST00000569950 TYW1BQ6NUM6 668 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.81□□□□□ -0.68
VPS35-211ENST00000569950 CHURC1Q8WUH1 139 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 SNX21Q969T3 373 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 TMX3Q96JJ7 454 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 AGBL1Q96MI9 1066 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 MOV10L1Q9BXT6 1211 aaKnown RBP10.81□□□□□ -0.68
VPS35-211ENST00000569950 ARHGAP39Q9C0H5 1083 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 PNMA3Q9UL41 463 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 MCM3APO60318 1980 aa10.81□□□□□ -0.68
VPS35-211ENST00000569950 HSPA8P11142 646 aaKnown RBP10.8□□□□□ -0.68
VPS35-211ENST00000569950 KIF5BP33176 963 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 FGD1P98174 961 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 CUL4AQ13619 759 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 CDC37Q16543 378 aaPredicted RBP10.8□□□□□ -0.68
VPS35-211ENST00000569950 OTUD7BQ6GQQ9 843 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 RIOX2Q8IUF8 465 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 ANKRD13CQ8N6S4 541 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 NSUN7Q8NE18 718 aaKnown RBP10.8□□□□□ -0.68
VPS35-211ENST00000569950 CTCFLQ8NI51 663 aaPredicted RBP10.8□□□□□ -0.68
VPS35-211ENST00000569950 SMARCC2Q8TAQ2 1214 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 CLEC4DQ8WXI8 215 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 PHKBQ93100 1093 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 SPATC1LQ9H0A9 340 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 ZFYVE28Q9HCC9 887 aa10.8□□□□□ -0.68
VPS35-211ENST00000569950 RAVER2Q9HCJ3 691 aaKnown RBP10.8□□□□□ -0.68
VPS35-211ENST00000569950 RBM28Q9NW13 759 aaKnown RBP10.8□□□□□ -0.68
VPS35-211ENST00000569950 GPR25O00155 361 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 ZBTB5O15062 677 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 JAK2O60674 1132 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 ICAM1P05362 532 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 OAZ1P54368 228 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 PPP2R5BQ15173 497 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 MUM1L1Q5H9M0 696 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 CCDC82Q8N4S0 544 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 MB21D1Q8N884 522 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 IL27Q8NEV9 243 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 SMCR8Q8TEV9 937 aaPredicted RBP10.79□□□□□ -0.68
VPS35-211ENST00000569950 AIFM3Q96NN9 605 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 LZTS2Q9BRK4 669 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 PAGR1Q9BTK6 254 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 VAT1LQ9HCJ6 419 aa10.79□□□□□ -0.68
VPS35-211ENST00000569950 PNMA6FA0A0J9YX94 578 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 PRPF3O43395 683 aaKnown RBP10.78□□□□□ -0.68
VPS35-211ENST00000569950 ST18O60284 1047 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 FMNL1O95466 1100 aaPredicted RBP10.78□□□□□ -0.68
VPS35-211ENST00000569950 IGHA2P01877 340 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 HSPA1AP0DMV8 641 aaKnown RBP10.78□□□□□ -0.68
VPS35-211ENST00000569950 HSPA1BP0DMV9 641 aaKnown RBP10.78□□□□□ -0.68
VPS35-211ENST00000569950 FDX1P10109 184 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 STAT3P40763 770 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 GNAQP50148 359 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 LACTBP83111 547 aaPredicted RBP10.78□□□□□ -0.68
VPS35-211ENST00000569950 GHRHRQ02643 423 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 NPY5RQ15761 445 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 WWC2Q6AWC2 1192 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 CCDC174Q6PII3 467 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 SAMD1Q6SPF0 538 aaPredicted RBP10.78□□□□□ -0.68
VPS35-211ENST00000569950 CCDC83Q8IWF9 413 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 SHCBP1Q8NEM2 672 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 GTF3C2Q8WUA4 911 aaPredicted RBP10.78□□□□□ -0.68
VPS35-211ENST00000569950 ZNF296Q8WUU4 475 aaPredicted RBP10.78□□□□□ -0.68
VPS35-211ENST00000569950 TBC1D5Q92609 795 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 USP6NLQ92738 828 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 TRIM47Q96LD4 638 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 FGD4Q96M96 766 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 TEX13BQ9BXU2 312 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 SLKQ9H2G2 1235 aaPredicted RBP10.78□□□□□ -0.68
VPS35-211ENST00000569950 EFCC1Q9HA90 598 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 V9GY48 417 aaPredicted RBP10.78□□□□□ -0.68
VPS35-211ENST00000569950 ASTN1O14525 1302 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 BRCA2P51587 3418 aa10.78□□□□□ -0.68
VPS35-211ENST00000569950 NFIBO00712 420 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 CAPN15O75808 1086 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 ERCC3P19447 782 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 PFKFB3Q16875 520 aaPredicted RBP10.77□□□□□ -0.69
VPS35-211ENST00000569950 SNRNP48Q6IEG0 339 aaKnown RBP10.77□□□□□ -0.69
VPS35-211ENST00000569950 SYNE3Q6ZMZ3 975 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 HOMER1Q86YM7 354 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 CPXCR1Q8N123 301 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 GPRC5AQ8NFJ5 357 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 PIBF1Q8WXW3 757 aa10.77□□□□□ -0.69
VPS35-211ENST00000569950 GPKOWQ92917 476 aaPredicted RBP eCLIP10.77□□□□□ -0.69
VPS35-211ENST00000569950 COA7Q96BR5 231 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms