RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 MSCO60682 206 aa21.63■■□□□ 1.05
CLN3-237ENST00000569030 PDHBP11177 359 aa21.63■■□□□ 1.05
CLN3-237ENST00000569030 TAL1P17542 331 aaPredicted RBP21.63■■□□□ 1.05
CLN3-237ENST00000569030 BTNL9Q6UXG8 535 aa21.63■■□□□ 1.05
CLN3-237ENST00000569030 RUFY2Q8WXA3 655 aa21.63■■□□□ 1.05
CLN3-237ENST00000569030 ANKRD35Q8N283 1001 aa21.62■■□□□ 1.05
CLN3-237ENST00000569030 FBXO40Q9UH90 709 aa21.62■■□□□ 1.05
CLN3-237ENST00000569030 NR2E3Q9Y5X4 410 aa21.62■■□□□ 1.05
CLN3-237ENST00000569030 LCTP09848 1927 aa21.61■■□□□ 1.05
CLN3-237ENST00000569030 SGSM2O43147 1006 aa21.61■■□□□ 1.05
CLN3-237ENST00000569030 SNHG28P0DPA3 235 aa21.61■■□□□ 1.05
CLN3-237ENST00000569030 SYDE2Q5VT97 1194 aa21.61■■□□□ 1.05
CLN3-237ENST00000569030 DGKHQ86XP1 1220 aa21.61■■□□□ 1.05
CLN3-237ENST00000569030 FGD4Q96M96 766 aa21.61■■□□□ 1.05
CLN3-237ENST00000569030 TRERF1Q96PN7 1200 aa21.61■■□□□ 1.05
CLN3-237ENST00000569030 RANBP17Q9H2T7 1088 aaKnown RBP21.61■■□□□ 1.05
CLN3-237ENST00000569030 RNF146Q9NTX7 359 aa21.61■■□□□ 1.05
CLN3-237ENST00000569030 COLQQ9Y215 455 aaPredicted RBP21.61■■□□□ 1.05
CLN3-237ENST00000569030 ZNF865P0CJ78 1059 aaPredicted RBP21.6■■□□□ 1.05
CLN3-237ENST00000569030 ALAS1P13196 640 aa21.6■■□□□ 1.05
CLN3-237ENST00000569030 NT5C2P49902 561 aa21.6■■□□□ 1.05
CLN3-237ENST00000569030 ZNF543Q08ER8 600 aa21.6■■□□□ 1.05
CLN3-237ENST00000569030 IQCA1Q86XH1 822 aa21.6■■□□□ 1.05
CLN3-237ENST00000569030 ENAHQ8N8S7 591 aaPredicted RBP21.6■■□□□ 1.05
CLN3-237ENST00000569030 ANKS1AQ92625 1134 aa21.6■■□□□ 1.05
CLN3-237ENST00000569030 ZSCAN10Q96SZ4 725 aaPredicted RBP21.6■■□□□ 1.05
CLN3-237ENST00000569030 ACAD9Q9H845 621 aa21.6■■□□□ 1.05
CLN3-237ENST00000569030 MYH6P13533 1939 aa21.59■■□□□ 1.05
CLN3-237ENST00000569030 SNAI1O95863 264 aaPredicted RBP21.59■■□□□ 1.05
CLN3-237ENST00000569030 CNTN2Q02246 1040 aa21.59■■□□□ 1.05
CLN3-237ENST00000569030 TKFCQ3LXA3 575 aa21.59■■□□□ 1.05
CLN3-237ENST00000569030 MUM1L1Q5H9M0 696 aa21.59■■□□□ 1.05
CLN3-237ENST00000569030 GJC2Q5T442 439 aaPredicted RBP21.59■■□□□ 1.05
CLN3-237ENST00000569030 MAMDC4Q6UXC1 1216 aa21.59■■□□□ 1.05
CLN3-237ENST00000569030 CENPQQ7L2Z9 268 aaPredicted RBP21.59■■□□□ 1.05
CLN3-237ENST00000569030 MSL3Q8N5Y2 521 aaKnown RBP21.59■■□□□ 1.05
CLN3-237ENST00000569030 KRT23Q9C075 422 aa21.59■■□□□ 1.05
CLN3-237ENST00000569030 A1CFQ9NQ94 594 aaKnown RBP21.59■■□□□ 1.05
CLN3-237ENST00000569030 NRBP1Q9UHY1 535 aa21.59■■□□□ 1.05
CLN3-237ENST00000569030 TAF6LQ9Y6J9 622 aa21.59■■□□□ 1.05
CLN3-237ENST00000569030 ICAM1P05362 532 aa21.58■■□□□ 1.05
CLN3-237ENST00000569030 CYP21A2P08686 494 aa21.58■■□□□ 1.05
CLN3-237ENST00000569030 GOLGA8HP0CJ92 632 aa21.58■■□□□ 1.05
CLN3-237ENST00000569030 CCDC178Q5BJE1 867 aa21.58■■□□□ 1.05
CLN3-237ENST00000569030 HABP4Q5JVS0 413 aaKnown RBP21.58■■□□□ 1.05
CLN3-237ENST00000569030 CYB5R4Q7L1T6 521 aa21.58■■□□□ 1.05
CLN3-237ENST00000569030 ZNF467Q7Z7K2 595 aaPredicted RBP21.58■■□□□ 1.05
CLN3-237ENST00000569030 PNMA1Q8ND90 353 aa21.58■■□□□ 1.05
CLN3-237ENST00000569030 SENP6Q9GZR1 1112 aaPredicted RBP21.58■■□□□ 1.05
CLN3-237ENST00000569030 CNNM2Q9H8M5 875 aa21.58■■□□□ 1.05
CLN3-237ENST00000569030 CCPG1Q9ULG6 757 aa21.58■■□□□ 1.05
CLN3-237ENST00000569030 TNKSO95271 1327 aa21.57■■□□□ 1.04
CLN3-237ENST00000569030 SYNGAP1Q96PV0 1343 aa21.57■■□□□ 1.04
CLN3-237ENST00000569030 DNM1LO00429 736 aa21.57■■□□□ 1.04
CLN3-237ENST00000569030 LRRC26Q2I0M4 334 aa21.57■■□□□ 1.04
CLN3-237ENST00000569030 C7orf61Q8IZ16 206 aa21.57■■□□□ 1.04
CLN3-237ENST00000569030 FAM133AQ8N9E0 248 aa21.57■■□□□ 1.04
CLN3-237ENST00000569030 CPVLQ9H3G5 476 aa21.57■■□□□ 1.04
CLN3-237ENST00000569030 KAT14Q9H8E8 782 aa21.57■■□□□ 1.04
CLN3-237ENST00000569030 CNPY2Q9Y2B0 182 aa21.57■■□□□ 1.04
CLN3-237ENST00000569030 POTEB2H3BUK9 544 aa21.56■■□□□ 1.04
CLN3-237ENST00000569030 CHRDL2Q6WN34 429 aa21.56■■□□□ 1.04
CLN3-237ENST00000569030 ARRDC4Q8NCT1 418 aa21.56■■□□□ 1.04
CLN3-237ENST00000569030 LENG1Q96BZ8 264 aaPredicted RBP21.56■■□□□ 1.04
CLN3-237ENST00000569030 U3KPZ7 1027 aaPredicted RBP21.56■■□□□ 1.04
CLN3-237ENST00000569030 SOWAHBA6NEL2 793 aa21.55■■□□□ 1.04
CLN3-237ENST00000569030 MYCNP04198 464 aaPredicted RBP21.55■■□□□ 1.04
CLN3-237ENST00000569030 LRRC41Q15345 812 aa21.55■■□□□ 1.04
CLN3-237ENST00000569030 MAP4K1Q92918 833 aa21.55■■□□□ 1.04
CLN3-237ENST00000569030 UBA5Q9GZZ9 404 aa21.55■■□□□ 1.04
CLN3-237ENST00000569030 CDKN2AIPQ9NXV6 580 aaPredicted RBP21.55■■□□□ 1.04
CLN3-237ENST00000569030 CYP39A1Q9NYL5 469 aa21.55■■□□□ 1.04
CLN3-237ENST00000569030 ASTN1O14525 1302 aa21.55■■□□□ 1.04
CLN3-237ENST00000569030 RARBP10826 455 aa21.54■■□□□ 1.04
CLN3-237ENST00000569030 AKR1A1P14550 325 aa21.54■■□□□ 1.04
CLN3-237ENST00000569030 SEC23AQ15436 765 aa21.54■■□□□ 1.04
CLN3-237ENST00000569030 GPATCH4Q5T3I0 446 aaKnown RBP21.54■■□□□ 1.04
CLN3-237ENST00000569030 STOX1Q6ZVD7 989 aa21.54■■□□□ 1.04
CLN3-237ENST00000569030 ARMCX2Q7L311 632 aa21.54■■□□□ 1.04
CLN3-237ENST00000569030 CCDC144CPQ8IYA2 1237 aa21.54■■□□□ 1.04
CLN3-237ENST00000569030 UBAC1Q9BSL1 405 aa21.54■■□□□ 1.04
CLN3-237ENST00000569030 XPNPEP3Q9NQH7 507 aa21.54■■□□□ 1.04
CLN3-237ENST00000569030 PCDH10Q9P2E7 1040 aa21.54■■□□□ 1.04
CLN3-237ENST00000569030 ZMYND8Q9ULU4 1186 aaPredicted RBP21.54■■□□□ 1.04
CLN3-237ENST00000569030 DDX49Q9Y6V7 483 aaKnown RBP21.54■■□□□ 1.04
CLN3-237ENST00000569030 BAZ2BQ9UIF8 2168 aaKnown RBP21.53■■□□□ 1.04
CLN3-237ENST00000569030 E7EWF7 191 aa21.53■■□□□ 1.04
CLN3-237ENST00000569030 PGK1P00558 417 aa21.53■■□□□ 1.04
CLN3-237ENST00000569030 ATN1P54259 1190 aaPredicted RBP21.53■■□□□ 1.04
CLN3-237ENST00000569030 ACVR2BQ13705 512 aa21.53■■□□□ 1.04
CLN3-237ENST00000569030 PURBQ96QR8 312 aaKnown RBP21.53■■□□□ 1.04
CLN3-237ENST00000569030 KATNBL1Q9H079 304 aa21.53■■□□□ 1.04
CLN3-237ENST00000569030 PRO3102Q9H379 93 aa21.53■■□□□ 1.04
CLN3-237ENST00000569030 RBM27Q9P2N5 1060 aaKnown RBP21.53■■□□□ 1.04
CLN3-237ENST00000569030 ZHX1Q9UKY1 873 aaPredicted RBP21.53■■□□□ 1.04
CLN3-237ENST00000569030 KBTBD13C9JR72 458 aa21.52■■□□□ 1.04
CLN3-237ENST00000569030 NFIBO00712 420 aa21.52■■□□□ 1.04
CLN3-237ENST00000569030 ADCY6O43306 1168 aa21.52■■□□□ 1.04
CLN3-237ENST00000569030 SYN1P17600 705 aa21.52■■□□□ 1.04
CLN3-237ENST00000569030 TRDNQ13061 729 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms