RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 ZNF444Q8N0Y2 327 aaPredicted RBP16.43■□□□□ 0.22
CLN3-235ENST00000568497 ZKSCAN3Q9BRR0 538 aa16.43■□□□□ 0.22
CLN3-235ENST00000568497 EPHX3Q9H6B9 360 aa16.43■□□□□ 0.22
CLN3-235ENST00000568497 RPAP3Q9H6T3 665 aaPredicted RBP16.43■□□□□ 0.22
CLN3-235ENST00000568497 CXXC1Q9P0U4 656 aaPredicted RBP16.43■□□□□ 0.22
CLN3-235ENST00000568497 MSRAQ9UJ68 235 aa16.43■□□□□ 0.22
CLN3-235ENST00000568497 DCDC2CA8MYV0 355 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 HIP1O00291 1037 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 SGSM2O43147 1006 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 STRNO43815 780 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 RARBP10826 455 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 VCAM1P19320 739 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 USP14P54578 494 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 AAK1Q2M2I8 961 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 RNF180Q86T96 592 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 FBXO28Q9NVF7 368 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 SLC5A4Q9NY91 659 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 CLIP2Q9UDT6 1046 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 ZNF236Q9UL36 1845 aa16.42■□□□□ 0.22
CLN3-235ENST00000568497 GREB1LQ9C091 1923 aaPredicted RBP16.41■□□□□ 0.22
CLN3-235ENST00000568497 IGKV6D-41A0A0C4DH26 115 aa16.41■□□□□ 0.22
CLN3-235ENST00000568497 A0A1W2PQ45 241 aaPredicted RBP16.41■□□□□ 0.22
CLN3-235ENST00000568497 A0A1W2PQY0 241 aa16.41■□□□□ 0.22
CLN3-235ENST00000568497 SPDYE16A6NNV3 312 aaPredicted RBP16.41■□□□□ 0.22
CLN3-235ENST00000568497 PGK1P00558 417 aa16.41■□□□□ 0.22
CLN3-235ENST00000568497 TSPY3P0CV98 308 aa16.41■□□□□ 0.22
CLN3-235ENST00000568497 TSPY8P0CW00 308 aa16.41■□□□□ 0.22
CLN3-235ENST00000568497 BMP1P13497 986 aa16.41■□□□□ 0.22
CLN3-235ENST00000568497 KCNQ1P51787 676 aa16.41■□□□□ 0.22
CLN3-235ENST00000568497 ESYT1Q9BSJ8 1104 aa16.41■□□□□ 0.22
CLN3-235ENST00000568497 IL17RBQ9NRM6 502 aa16.41■□□□□ 0.22
CLN3-235ENST00000568497 PDE4BQ07343 736 aa16.4■□□□□ 0.22
CLN3-235ENST00000568497 FAAP100Q0VG06 881 aa16.4■□□□□ 0.22
CLN3-235ENST00000568497 PPIGQ13427 754 aaKnown RBP eCLIP16.4■□□□□ 0.226e-7■■□□□ 11.8
CLN3-235ENST00000568497 RAB30Q15771 203 aa16.4■□□□□ 0.22
CLN3-235ENST00000568497 BMP2KLQ5H9B9 411 aa16.4■□□□□ 0.22
CLN3-235ENST00000568497 CCDC17Q96LX7 622 aa16.4■□□□□ 0.22
CLN3-235ENST00000568497 MOV10L1Q9BXT6 1211 aaKnown RBP16.4■□□□□ 0.22
CLN3-235ENST00000568497 KIAA1683Q9H0B3 1180 aa16.4■□□□□ 0.22
CLN3-235ENST00000568497 NKX2-4Q9H2Z4 354 aa16.4■□□□□ 0.22
CLN3-235ENST00000568497 SLC28A3Q9HAS3 691 aa16.4■□□□□ 0.22
CLN3-235ENST00000568497 ANAPC4Q9UJX5 808 aa16.4■□□□□ 0.22
CLN3-235ENST00000568497 MYH4Q9Y623 1939 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 PIEZO1Q92508 2521 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 TSPY2A6NKD2 308 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 B4E1Z4 1266 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 COBLO75128 1261 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 TIMP1P01033 207 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 TAL1P17542 331 aaPredicted RBP16.39■□□□□ 0.21
CLN3-235ENST00000568497 FAM83BQ5T0W9 1011 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 STOX1Q6ZVD7 989 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 SHCBP1Q8NEM2 672 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 NEDD1Q8NHV4 660 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 TOX2Q96NM4 488 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 DSCC1Q9BVC3 393 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 TANGO6Q9C0B7 1094 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 LSG1Q9H089 658 aaKnown RBP16.39■□□□□ 0.21
CLN3-235ENST00000568497 ARHGEF10LQ9HCE6 1279 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 STARD7Q9NQZ5 370 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 TMX2Q9Y320 296 aa16.39■□□□□ 0.21
CLN3-235ENST00000568497 SMCHD1A6NHR9 2005 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 ZNF213O14771 459 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 NDUFB10O96000 172 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 SLC3A2P08195 630 aaKnown RBP16.38■□□□□ 0.21
CLN3-235ENST00000568497 ACRP10323 421 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 ERCC3P19447 782 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 SNAP25P60880 206 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 PLS1Q14651 629 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 TMEM240Q5SV17 173 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 MFSD5Q6N075 450 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 CHST3Q7LGC8 479 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 VCPKMTQ9H867 229 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 KANSL2Q9H9L4 492 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 MTMR4Q9NYA4 1195 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 ISY1Q9ULR0 285 aaKnown RBP16.38■□□□□ 0.21
CLN3-235ENST00000568497 RBM8AQ9Y5S9 174 aaKnown RBP16.38■□□□□ 0.21
CLN3-235ENST00000568497 MUC6Q6W4X9 2439 aa16.38■□□□□ 0.21
CLN3-235ENST00000568497 FAM86C2PA6NEL3 165 aa16.37■□□□□ 0.21
CLN3-235ENST00000568497 MFAP1P55081 439 aaKnown RBP16.37■□□□□ 0.21
CLN3-235ENST00000568497 PSRC1Q6PGN9 363 aaPredicted RBP16.37■□□□□ 0.21
CLN3-235ENST00000568497 ZNF365Q70YC5 407 aa16.37■□□□□ 0.21
CLN3-235ENST00000568497 ANKRD33Q7Z3H0 272 aa16.37■□□□□ 0.21
CLN3-235ENST00000568497 NCAPG2Q86XI2 1143 aa16.37■□□□□ 0.21
CLN3-235ENST00000568497 MAML3Q96JK9 1138 aa16.37■□□□□ 0.21
CLN3-235ENST00000568497 SPATC1LQ9H0A9 340 aa16.37■□□□□ 0.21
CLN3-235ENST00000568497 ANO2Q9NQ90 1003 aa16.37■□□□□ 0.21
CLN3-235ENST00000568497 NRBP1Q9UHY1 535 aa16.37■□□□□ 0.21
CLN3-235ENST00000568497 STX8Q9UNK0 236 aa16.37■□□□□ 0.21
CLN3-235ENST00000568497 LAMA4Q16363 1823 aa16.37■□□□□ 0.21
CLN3-235ENST00000568497 GBF1Q92538 1859 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 F5H6K3 240 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 ORC4O43929 436 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 KDM4AO75164 1064 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 CDC45O75419 566 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 CYP21A2P08686 494 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 CSF2RAP15509 400 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 KLRC3Q07444 240 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 RASIP1Q5U651 963 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 MFSD6Q6ZSS7 791 aa16.36■□□□□ 0.21
CLN3-235ENST00000568497 CYB5R4Q7L1T6 521 aa16.36■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms