RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 COPB2P35606 906 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 EXOSC10Q01780 885 aaKnown RBP11.47□□□□□ -0.57
CLK3-220ENST00000567992 CACNB1Q02641 598 aaPredicted RBP11.47□□□□□ -0.57
CLK3-220ENST00000567992 IKQ13123 557 aaPredicted RBP11.47□□□□□ -0.57
CLK3-220ENST00000567992 GRM4Q14833 912 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 WTAPQ15007 396 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 ASPRV1Q53RT3 343 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 MAP3K21Q5TCX8 1036 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 CCDC174Q6PII3 467 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 STAG2Q8N3U4 1231 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 CWC22Q9HCG8 908 aaKnown RBP11.47□□□□□ -0.57
CLK3-220ENST00000567992 MAD2L2Q9UI95 211 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 SNX14Q9Y5W7 946 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 IVNS1ABPQ9Y6Y0 642 aa11.47□□□□□ -0.57
CLK3-220ENST00000567992 WDR19Q8NEZ3 1342 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 POTEFA5A3E0 1075 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 PALM3A6NDB9 673 aaPredicted RBP11.46□□□□□ -0.57
CLK3-220ENST00000567992 MYCP01106 439 aaPredicted RBP11.46□□□□□ -0.57
CLK3-220ENST00000567992 ICAM1P05362 532 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 PARP1P09874 1014 aaKnown RBP11.46□□□□□ -0.57
CLK3-220ENST00000567992 ZKSCAN1P17029 563 aaPredicted RBP11.46□□□□□ -0.57
CLK3-220ENST00000567992 SART3Q15020 963 aaKnown RBP11.46□□□□□ -0.57
CLK3-220ENST00000567992 NBPF11Q86T75 865 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 TMEM87BQ96K49 555 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 NEK1Q96PY6 1258 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 MMP19Q99542 508 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 USP26Q9BXU7 913 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 LRRC2Q9BYS8 371 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 UBA5Q9GZZ9 404 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 UNC93B1Q9H1C4 597 aa11.46□□□□□ -0.57
CLK3-220ENST00000567992 DNAJC25-GNG10A0A024R161 153 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 ERICH2A1L162 156 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 PGK2P07205 417 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 FCER1AP12319 257 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 CCL5P13501 91 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 LIFRP42702 1097 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 KRT32Q14532 448 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 ZNF792Q3KQV3 632 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 DHX32Q7L7V1 743 aaKnown RBP11.45□□□□□ -0.58
CLK3-220ENST00000567992 SGMS1Q86VZ5 419 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 ZNF654Q8IZM8 581 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 CHST13Q8NET6 341 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 SHISA4Q96DD7 197 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 MTMR8Q96EF0 704 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 FGD4Q96M96 766 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 TCEANC2Q96MN5 208 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 MYL10Q9BUA6 226 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 JMJD4Q9H9V9 463 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 PAK6Q9NQU5 681 aaPredicted RBP11.45□□□□□ -0.58
CLK3-220ENST00000567992 RNF146Q9NTX7 359 aa11.45□□□□□ -0.58
CLK3-220ENST00000567992 DDAH1O94760 285 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 PRKAR2AP13861 404 aaKnown RBP11.44□□□□□ -0.58
CLK3-220ENST00000567992 CPA1P15085 419 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 RGS19P49795 217 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 UBXN2AP68543 259 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 CACNB2Q08289 660 aaPredicted RBP11.44□□□□□ -0.58
CLK3-220ENST00000567992 KCTD2Q14681 263 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 CDC37Q16543 378 aaPredicted RBP11.44□□□□□ -0.58
CLK3-220ENST00000567992 TKFCQ3LXA3 575 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 MUM1L1Q5H9M0 696 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 OLFML2BQ68BL8 750 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 DPP9Q86TI2 863 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 TRMT44Q8IYL2 757 aaKnown RBP11.44□□□□□ -0.58
CLK3-220ENST00000567992 ADGRF4Q8IZF3 695 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 MAML3Q96JK9 1138 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 JAKMIP1Q96N16 626 aaKnown RBP11.44□□□□□ -0.58
CLK3-220ENST00000567992 ACAD9Q9H845 621 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 A1CFQ9NQ94 594 aaKnown RBP11.44□□□□□ -0.58
CLK3-220ENST00000567992 HOMER2Q9NSB8 354 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 FBXO40Q9UH90 709 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 CCPG1Q9ULG6 757 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 CTDP1Q9Y5B0 961 aaPredicted RBP11.44□□□□□ -0.58
CLK3-220ENST00000567992 MCM3APO60318 1980 aa11.44□□□□□ -0.58
CLK3-220ENST00000567992 ASTN1O14525 1302 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 BAZ2BQ9UIF8 2168 aaKnown RBP11.43□□□□□ -0.58
CLK3-220ENST00000567992 KLRF2D3W0D1 207 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 CYTH3O43739 400 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 PPP1R11O60927 126 aaPredicted RBP11.43□□□□□ -0.58
CLK3-220ENST00000567992 ALAS1P13196 640 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 SLC4A3P48751 1232 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 QRICH1Q2TAL8 776 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 CATIPQ7Z7H3 387 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 TRPV1Q8NER1 839 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 CLEC4DQ8WXI8 215 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 TRERF1Q96PN7 1200 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 MAP3K14Q99558 947 aa11.43□□□□□ -0.58
CLK3-220ENST00000567992 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.43□□□□□ -0.58
CLK3-220ENST00000567992 BIN2Q9UBW5 565 aaPredicted RBP11.43□□□□□ -0.58
CLK3-220ENST00000567992 DIS3Q9Y2L1 958 aaKnown RBP11.43□□□□□ -0.58
CLK3-220ENST00000567992 RPTORQ8N122 1335 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 NFIBO00712 420 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 SEC24BO95487 1268 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 GJB1P08034 283 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 HMGB1P09429 215 aaKnown RBP11.42□□□□□ -0.58
CLK3-220ENST00000567992 CYBAP13498 195 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 EN2P19622 333 aaPredicted RBP11.42□□□□□ -0.58
CLK3-220ENST00000567992 RXRAP19793 462 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 RPS6KB1P23443 525 aa11.42□□□□□ -0.58
CLK3-220ENST00000567992 CCND3P30281 292 aaPredicted RBP11.42□□□□□ -0.58
CLK3-220ENST00000567992 HOXD11P31277 338 aaPredicted RBP11.42□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms