RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 RBM43Q6ZSC3 357 aaKnown RBP16.76■□□□□ 0.27
COMMD4-221ENST00000567935 CCAR1Q8IX12 1150 aaKnown RBP16.76■□□□□ 0.27
COMMD4-221ENST00000567935 CMTR1Q8N1G2 835 aaKnown RBP16.76■□□□□ 0.27
COMMD4-221ENST00000567935 ZNF713Q8N859 430 aaPredicted RBP16.76■□□□□ 0.27
COMMD4-221ENST00000567935 MRPS27Q92552 414 aaKnown RBP16.76■□□□□ 0.27
COMMD4-221ENST00000567935 DACT1Q9NYF0 836 aa16.76■□□□□ 0.27
COMMD4-221ENST00000567935 NOL7Q9UMY1 257 aaKnown RBP16.76■□□□□ 0.27
COMMD4-221ENST00000567935 CLIC4Q9Y696 253 aa16.76■□□□□ 0.27
COMMD4-221ENST00000567935 ZSWIM8A7E2V4 1837 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 BTBD18B2RXH4 712 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 AKR1B1P15121 316 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 TRAPPC10P48553 1259 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 MTFR1Q15390 333 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 Q7L0L9 218 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 UBE2Q1Q7Z7E8 422 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 APOBEC3FQ8IUX4 373 aaKnown RBP16.75■□□□□ 0.27
COMMD4-221ENST00000567935 CCDC12Q8WUD4 166 aaPredicted RBP16.75■□□□□ 0.27
COMMD4-221ENST00000567935 FTOQ9C0B1 505 aaKnown RBP eCLIP16.75■□□□□ 0.27
COMMD4-221ENST00000567935 TNMDQ9H2S6 317 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 VPS54Q9P1Q0 977 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 HERC5Q9UII4 1024 aaKnown RBP16.75■□□□□ 0.27
COMMD4-221ENST00000567935 SYNPO2Q9UMS6 1093 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 PCDHA7Q9UN72 937 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 KCNJ14Q9UNX9 436 aa16.75■□□□□ 0.27
COMMD4-221ENST00000567935 TESPA1A2RU30 521 aaPredicted RBP16.74■□□□□ 0.27
COMMD4-221ENST00000567935 KLRF2D3W0D1 207 aa16.74■□□□□ 0.27
COMMD4-221ENST00000567935 CUTAO60888 179 aa16.74■□□□□ 0.27
COMMD4-221ENST00000567935 CMA1P23946 247 aa16.74■□□□□ 0.27
COMMD4-221ENST00000567935 TATDN1Q6P1N9 297 aa16.74■□□□□ 0.27
COMMD4-221ENST00000567935 ZSCAN29Q8IWY8 852 aaPredicted RBP16.74■□□□□ 0.27
COMMD4-221ENST00000567935 DEFB123Q8N688 67 aa16.74■□□□□ 0.27
COMMD4-221ENST00000567935 STXBP5LQ9Y2K9 1186 aa16.74■□□□□ 0.27
COMMD4-221ENST00000567935 NR2E3Q9Y5X4 410 aa16.74■□□□□ 0.27
COMMD4-221ENST00000567935 SIPA1L1O43166 1804 aa16.74■□□□□ 0.27
COMMD4-221ENST00000567935 KINO60870 393 aaKnown RBP16.73■□□□□ 0.27
COMMD4-221ENST00000567935 CAVIN2O95810 425 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 CCDC192P0DO97 292 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 SNHG28P0DPA3 235 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 NLRP5P59047 1200 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 PTPAQ15257 358 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 UVSSAQ2YD98 709 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 GPATCH4Q5T3I0 446 aaKnown RBP16.73■□□□□ 0.27
COMMD4-221ENST00000567935 TMEM179Q6ZVK1 233 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 FSIP1Q8NA03 581 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 DAGLBQ8NCG7 672 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 PRMT6Q96LA8 375 aaPredicted RBP16.73■□□□□ 0.27
COMMD4-221ENST00000567935 HTATIP2Q9BUP3 242 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 ARHGAP39Q9C0H5 1083 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 TDRD3Q9H7E2 651 aaKnown RBP16.73■□□□□ 0.27
COMMD4-221ENST00000567935 KANSL2Q9H9L4 492 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 NYAP2Q9P242 653 aa16.73■□□□□ 0.27
COMMD4-221ENST00000567935 MYO1BO43795 1136 aa16.72■□□□□ 0.27
COMMD4-221ENST00000567935 NR1I2O75469 434 aa16.72■□□□□ 0.27
COMMD4-221ENST00000567935 PDHBP11177 359 aa16.72■□□□□ 0.27
COMMD4-221ENST00000567935 ARHGEF6Q15052 776 aa16.72■□□□□ 0.27
COMMD4-221ENST00000567935 SPDYE2Q495Y8 402 aa16.72■□□□□ 0.27
COMMD4-221ENST00000567935 CERKLQ49MI3 558 aaPredicted RBP16.72■□□□□ 0.27
COMMD4-221ENST00000567935 FAM83AQ86UY5 434 aa16.72■□□□□ 0.27
COMMD4-221ENST00000567935 STAG2Q8N3U4 1231 aa16.72■□□□□ 0.27
COMMD4-221ENST00000567935 ENGASEQ8NFI3 743 aa16.72■□□□□ 0.27
COMMD4-221ENST00000567935 FAM151AQ8WW52 585 aa16.72■□□□□ 0.27
COMMD4-221ENST00000567935 MKL1Q969V6 931 aa16.72■□□□□ 0.27
COMMD4-221ENST00000567935 RRP36Q96EU6 259 aaKnown RBP16.72■□□□□ 0.27
COMMD4-221ENST00000567935 SEC63Q9UGP8 760 aaKnown RBP16.72■□□□□ 0.27
COMMD4-221ENST00000567935 FAM237AA0A1B0GTK4 181 aa16.71■□□□□ 0.27
COMMD4-221ENST00000567935 DDTLA6NHG4 134 aaPredicted RBP16.71■□□□□ 0.27
COMMD4-221ENST00000567935 TRIM75PA6NK02 468 aa16.71■□□□□ 0.27
COMMD4-221ENST00000567935 TCP10Q12799 353 aa16.71■□□□□ 0.27
COMMD4-221ENST00000567935 AXDND1Q5T1B0 1012 aaPredicted RBP16.71■□□□□ 0.27
COMMD4-221ENST00000567935 ZFPM1Q8IX07 1006 aa16.71■□□□□ 0.27
COMMD4-221ENST00000567935 ZNF579Q8NAF0 562 aaKnown RBP16.71■□□□□ 0.27
COMMD4-221ENST00000567935 TNFRSF25Q93038 417 aa16.71■□□□□ 0.27
COMMD4-221ENST00000567935 FUCA2Q9BTY2 467 aa16.71■□□□□ 0.27
COMMD4-221ENST00000567935 RBSNQ9H1K0 784 aa16.71■□□□□ 0.27
COMMD4-221ENST00000567935 RIOX1Q9H6W3 641 aa16.71■□□□□ 0.27
COMMD4-221ENST00000567935 BARHL2Q9NY43 387 aa16.71■□□□□ 0.27
COMMD4-221ENST00000567935 ZNF70Q9UC06 446 aaPredicted RBP16.71■□□□□ 0.27
COMMD4-221ENST00000567935 VCANP13611 3396 aa16.71■□□□□ 0.26
COMMD4-221ENST00000567935 MYH4Q9Y623 1939 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 BAZ2BQ9UIF8 2168 aaKnown RBP16.7■□□□□ 0.26
COMMD4-221ENST00000567935 ESYT2A0FGR8 921 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 MPHOSPH10O00566 681 aaKnown RBP16.7■□□□□ 0.26
COMMD4-221ENST00000567935 NR5A1Q13285 461 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 TAF1CQ15572 869 aaPredicted RBP16.7■□□□□ 0.26
COMMD4-221ENST00000567935 NPY5RQ15761 445 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 SH3BP5LQ7L8J4 393 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 FMR1NBQ8N0W7 255 aaPredicted RBP16.7■□□□□ 0.26
COMMD4-221ENST00000567935 KRI1Q8N9T8 703 aaKnown RBP16.7■□□□□ 0.26
COMMD4-221ENST00000567935 DCAF4Q8WV16 495 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 ZBED3Q96IU2 234 aaPredicted RBP16.7■□□□□ 0.26
COMMD4-221ENST00000567935 TIGD1Q96MW7 591 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 DEFB129Q9H1M3 183 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 DNAJC18Q9H819 358 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 CLIP2Q9UDT6 1046 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 PCDHA4Q9UN74 947 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 PCDHAC2Q9Y5I4 1007 aa16.7■□□□□ 0.26
COMMD4-221ENST00000567935 CYTH3O43739 400 aa16.69■□□□□ 0.26
COMMD4-221ENST00000567935 PPP1R12BO60237 982 aaPredicted RBP16.69■□□□□ 0.26
COMMD4-221ENST00000567935 TBC1D12O60347 775 aa16.69■□□□□ 0.26
COMMD4-221ENST00000567935 PTPREP23469 700 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms