RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 PNMA1Q8ND90 353 aa15.7■□□□□ 0.1
CLK3-218ENST00000566926 CHMP4CQ96CF2 233 aa15.7■□□□□ 0.1
CLK3-218ENST00000566926 FRMPD3Q5JV73 1810 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 E7EWF7 191 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 MSCO60682 206 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 COBLO75128 1261 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 ZNF543Q08ER8 600 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 TRIM32Q13049 653 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 IFIT1BQ5T764 474 aaKnown RBP15.69■□□□□ 0.1
CLK3-218ENST00000566926 SYDE2Q5VT97 1194 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 RNF20Q5VTR2 975 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 ENAHQ8N8S7 591 aaPredicted RBP15.69■□□□□ 0.1
CLK3-218ENST00000566926 ANKLE1Q8NAG6 615 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 IL17RAQ96F46 866 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 LSG1Q9H089 658 aaKnown RBP15.69■□□□□ 0.1
CLK3-218ENST00000566926 CRISPLD2Q9H0B8 497 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 GPCPD1Q9NPB8 672 aa15.69■□□□□ 0.1
CLK3-218ENST00000566926 FRMPD2Q68DX3 1309 aaPredicted RBP15.68■□□□□ 0.1
CLK3-218ENST00000566926 MCM3APO60318 1980 aa15.68■□□□□ 0.1
CLK3-218ENST00000566926 ASPRV1Q53RT3 343 aa15.68■□□□□ 0.1
CLK3-218ENST00000566926 ANKRD35Q8N283 1001 aa15.68■□□□□ 0.1
CLK3-218ENST00000566926 SHISA4Q96DD7 197 aa15.68■□□□□ 0.1
CLK3-218ENST00000566926 MAML3Q96JK9 1138 aa15.68■□□□□ 0.1
CLK3-218ENST00000566926 RANBP17Q9H2T7 1088 aaKnown RBP15.68■□□□□ 0.1
CLK3-218ENST00000566926 ACAD9Q9H845 621 aa15.68■□□□□ 0.1
CLK3-218ENST00000566926 FLRT1Q9NZU1 646 aa15.68■□□□□ 0.1
CLK3-218ENST00000566926 RIPK3Q9Y572 518 aa15.68■□□□□ 0.1
CLK3-218ENST00000566926 HSPA4P34932 840 aa15.67■□□□□ 0.1
CLK3-218ENST00000566926 RABEP1Q15276 862 aa15.67■□□□□ 0.1
CLK3-218ENST00000566926 ZNF792Q3KQV3 632 aa15.67■□□□□ 0.1
CLK3-218ENST00000566926 TTBK2Q6IQ55 1244 aa15.67■□□□□ 0.1
CLK3-218ENST00000566926 CCDC174Q6PII3 467 aa15.67■□□□□ 0.1
CLK3-218ENST00000566926 MSL3Q8N5Y2 521 aaKnown RBP15.67■□□□□ 0.1
CLK3-218ENST00000566926 NRBP1Q9UHY1 535 aa15.67■□□□□ 0.1
CLK3-218ENST00000566926 ZNF536O15090 1300 aa15.67■□□□□ 0.1
CLK3-218ENST00000566926 IFIT3O14879 490 aaKnown RBP15.66■□□□□ 0.1
CLK3-218ENST00000566926 TNRC18O15417 2968 aaPredicted RBP15.66■□□□□ 0.1
CLK3-218ENST00000566926 FARP2O94887 1054 aaPredicted RBP15.66■□□□□ 0.1
CLK3-218ENST00000566926 ICAM1P05362 532 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 PGK2P07205 417 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 ALAS1P13196 640 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 CNGA1P29973 690 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 CCND3P30281 292 aaPredicted RBP15.66■□□□□ 0.1
CLK3-218ENST00000566926 CYP2C19P33261 490 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 SLC16A2P36021 539 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 BECN1Q14457 450 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 SEC23AQ15436 765 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 CYB5R4Q7L1T6 521 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 RASGRP2Q7LDG7 609 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 AGBL1Q96MI9 1066 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 TRERF1Q96PN7 1200 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 TINF2Q9BSI4 451 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 MTA3Q9BTC8 594 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 HTATIP2Q9BUP3 242 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 HOMER2Q9NSB8 354 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 RNF146Q9NTX7 359 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 CCPG1Q9ULG6 757 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 BRCA2P51587 3418 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 PFASO15067 1338 aa15.66■□□□□ 0.1
CLK3-218ENST00000566926 DNAJC25-GNG10A0A024R161 153 aa15.65■□□□□ 0.1
CLK3-218ENST00000566926 IGHA2P01877 340 aa15.65■□□□□ 0.1
CLK3-218ENST00000566926 PARP1P09874 1014 aaKnown RBP15.65■□□□□ 0.1
CLK3-218ENST00000566926 WTAPQ15007 396 aa15.65■□□□□ 0.1
CLK3-218ENST00000566926 NECTIN1Q15223 517 aa15.65■□□□□ 0.1
CLK3-218ENST00000566926 ZNF467Q7Z7K2 595 aaPredicted RBP15.65■□□□□ 0.1
CLK3-218ENST00000566926 OGDHLQ9ULD0 1010 aa15.65■□□□□ 0.1
CLK3-218ENST00000566926 SLC27A2O14975 620 aa15.64■□□□□ 0.09
CLK3-218ENST00000566926 CYBAP13498 195 aa15.64■□□□□ 0.09
CLK3-218ENST00000566926 MCM5P33992 734 aa15.64■□□□□ 0.09
CLK3-218ENST00000566926 CREB3L3Q68CJ9 461 aa15.64■□□□□ 0.09
CLK3-218ENST00000566926 NECAB2Q7Z6G3 386 aa15.64■□□□□ 0.09
CLK3-218ENST00000566926 TMTC2Q8N394 836 aa15.64■□□□□ 0.09
CLK3-218ENST00000566926 KCNB2Q92953 911 aa15.64■□□□□ 0.09
CLK3-218ENST00000566926 DDX20Q9UHI6 824 aaKnown RBP15.64■□□□□ 0.09
CLK3-218ENST00000566926 BAZ2BQ9UIF8 2168 aaKnown RBP15.64■□□□□ 0.09
CLK3-218ENST00000566926 CNPY2Q9Y2B0 182 aa15.64■□□□□ 0.09
CLK3-218ENST00000566926 WDR19Q8NEZ3 1342 aa15.64■□□□□ 0.09
CLK3-218ENST00000566926 SYNGAP1Q96PV0 1343 aa15.64■□□□□ 0.09
CLK3-218ENST00000566926 POTEB2H3BUK9 544 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 SEPT4O43236 478 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 GOLGA8HP0CJ92 632 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 SNAP25P60880 206 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 KRT32Q14532 448 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 TMEM67Q5HYA8 995 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 LHX8Q68G74 356 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 MAMDC4Q6UXC1 1216 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 STOX1Q6ZVD7 989 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 UBE2Q1Q7Z7E8 422 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 CATIPQ7Z7H3 387 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 MB21D2Q8IYB1 491 aaPredicted RBP15.63■□□□□ 0.09
CLK3-218ENST00000566926 TMEM87BQ96K49 555 aa15.63■□□□□ 0.09
CLK3-218ENST00000566926 IPO9Q96P70 1041 aaKnown RBP15.63■□□□□ 0.09
CLK3-218ENST00000566926 DHX16O60231 1041 aaKnown RBP15.62■□□□□ 0.09
CLK3-218ENST00000566926 ST18O60284 1047 aa15.62■□□□□ 0.09
CLK3-218ENST00000566926 TSGA10IPQ3SY00 556 aa15.62■□□□□ 0.09
CLK3-218ENST00000566926 SNX21Q969T3 373 aa15.62■□□□□ 0.09
CLK3-218ENST00000566926 UBA5Q9GZZ9 404 aa15.62■□□□□ 0.09
CLK3-218ENST00000566926 MAF1Q9H063 256 aa15.62■□□□□ 0.09
CLK3-218ENST00000566926 A1CFQ9NQ94 594 aaKnown RBP15.62■□□□□ 0.09
CLK3-218ENST00000566926 DAXXQ9UER7 740 aaPredicted RBP15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms