RNA–Protein interactions for RNA: ENST00000565834.1

COMMD4-213, Transcript of COMM domain containing 4, humanhuman

TSL 5

Gene COMMD4, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-213ENST00000565834 SLF1Q9BQI6 1058 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 GPBP1L1Q9HC44 474 aaPredicted RBP21.53■■□□□ 1.04
COMMD4-213ENST00000565834 C6orf50Q9HD87 102 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 ESYT2A0FGR8 921 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 GNA11P29992 359 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 PPIL2Q13356 520 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 FBXO11Q86XK2 927 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 C2orf69Q8N8R5 385 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 PRPF38AQ8NAV1 312 aaKnown RBP21.53■■□□□ 1.04
COMMD4-213ENST00000565834 ANP32EQ9BTT0 268 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 AMNQ9BXJ7 453 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 CFAP45Q9UL16 551 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 LOC285556D6RIA3 1793 aa21.53■■□□□ 1.04
COMMD4-213ENST00000565834 SMCO2A6NFE2 343 aa21.52■■□□□ 1.04
COMMD4-213ENST00000565834 IRF6O14896 467 aa21.52■■□□□ 1.04
COMMD4-213ENST00000565834 FIBPO43427 364 aa21.52■■□□□ 1.04
COMMD4-213ENST00000565834 FLOT1O75955 427 aa21.52■■□□□ 1.04
COMMD4-213ENST00000565834 OPTNQ96CV9 577 aa21.52■■□□□ 1.04
COMMD4-213ENST00000565834 RANBP17Q9H2T7 1088 aaKnown RBP21.52■■□□□ 1.04
COMMD4-213ENST00000565834 GDPD2Q9HCC8 539 aa21.52■■□□□ 1.04
COMMD4-213ENST00000565834 TFIP11Q9UBB9 837 aaKnown RBP21.52■■□□□ 1.04
COMMD4-213ENST00000565834 PCDHA1Q9Y5I3 950 aa21.52■■□□□ 1.04
COMMD4-213ENST00000565834 CXCL11O14625 94 aa21.51■■□□□ 1.03
COMMD4-213ENST00000565834 ITGBL1O95965 494 aaPredicted RBP21.51■■□□□ 1.03
COMMD4-213ENST00000565834 PTMSP20962 102 aa21.51■■□□□ 1.03
COMMD4-213ENST00000565834 TRAF1Q13077 416 aa21.51■■□□□ 1.03
COMMD4-213ENST00000565834 CSPP1Q1MSJ5 1256 aa21.51■■□□□ 1.03
COMMD4-213ENST00000565834 TNFRSF25Q93038 417 aa21.51■■□□□ 1.03
COMMD4-213ENST00000565834 SLC10A4Q96EP9 437 aa21.51■■□□□ 1.03
COMMD4-213ENST00000565834 SCAND2PQ9GZW5 306 aaPredicted RBP21.51■■□□□ 1.03
COMMD4-213ENST00000565834 ADCY7P51828 1080 aa21.5■■□□□ 1.03
COMMD4-213ENST00000565834 BICD2Q8TD16 824 aa21.5■■□□□ 1.03
COMMD4-213ENST00000565834 PPP1R9AQ9ULJ8 1098 aa21.5■■□□□ 1.03
COMMD4-213ENST00000565834 KCNH4Q9UQ05 1017 aa21.5■■□□□ 1.03
COMMD4-213ENST00000565834 RLFQ13129 1914 aa21.5■■□□□ 1.03
COMMD4-213ENST00000565834 CCDC174Q6PII3 467 aa21.5■■□□□ 1.03
COMMD4-213ENST00000565834 USP28Q96RU2 1077 aa21.5■■□□□ 1.03
COMMD4-213ENST00000565834 SMCHD1A6NHR9 2005 aa21.49■■□□□ 1.03
COMMD4-213ENST00000565834 A0A0G2JLL6 359 aaPredicted RBP21.49■■□□□ 1.03
COMMD4-213ENST00000565834 PRPF40AO75400 957 aaKnown RBP21.49■■□□□ 1.03
COMMD4-213ENST00000565834 NBR1Q14596 966 aa21.49■■□□□ 1.03
COMMD4-213ENST00000565834 USH1GQ495M9 461 aa21.49■■□□□ 1.03
COMMD4-213ENST00000565834 PRRT2Q7Z6L0 340 aaPredicted RBP21.49■■□□□ 1.03
COMMD4-213ENST00000565834 TMEM87AQ8NBN3 555 aa21.49■■□□□ 1.03
COMMD4-213ENST00000565834 USP17L15C9J2P7 530 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 USP17L13C9JLJ4 530 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 USP17L11C9JVI0 530 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 USP17L18D6R9N7 530 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 USP17L22D6RA61 530 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 USP17L17D6RBQ6 530 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 USP17L19D6RCP7 530 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 USP17L20D6RJB6 530 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 M0R2N6 131 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 ADAMTS3O15072 1205 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 CEBPZQ03701 1054 aaKnown RBP21.48■■□□□ 1.03
COMMD4-213ENST00000565834 USP17L24Q0WX57 530 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 RILPL1Q5EBL4 403 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 PROCA1Q8NCQ7 364 aaPredicted RBP21.48■■□□□ 1.03
COMMD4-213ENST00000565834 CUL5Q93034 780 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 SPATA32Q96LK8 384 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 FTOQ9C0B1 505 aaKnown RBP eCLIP21.48■■□□□ 1.03
COMMD4-213ENST00000565834 GLT8D2Q9H1C3 349 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 RIC8AQ9NPQ8 531 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 PCDHA6Q9UN73 950 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 PCDHA8Q9Y5H6 950 aa21.48■■□□□ 1.03
COMMD4-213ENST00000565834 FDX1P10109 184 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 GADL1Q6ZQY3 521 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 CATSPERGQ6ZRH7 1159 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 PIK3AP1Q6ZUJ8 805 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 REXO1Q8N1G1 1221 aaKnown RBP21.47■■□□□ 1.03
COMMD4-213ENST00000565834 RASGRP4Q8TDF6 673 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 LMBRD1Q9NUN5 540 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 RTEL1Q9NZ71 1219 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 NOL7Q9UMY1 257 aaKnown RBP21.47■■□□□ 1.03
COMMD4-213ENST00000565834 CTDP1Q9Y5B0 961 aaPredicted RBP21.47■■□□□ 1.03
COMMD4-213ENST00000565834 COL11A1P12107 1806 aaPredicted RBP21.47■■□□□ 1.03
COMMD4-213ENST00000565834 CCDC194A0A1B0GVG4 234 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 FAM205CA6NFA0 338 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 MRPL12P52815 198 aaKnown RBP21.47■■□□□ 1.03
COMMD4-213ENST00000565834 EARS2Q5JPH6 523 aaKnown RBP21.47■■□□□ 1.03
COMMD4-213ENST00000565834 CST9Q5W186 159 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 LEO1Q8WVC0 666 aaPredicted RBP21.47■■□□□ 1.03
COMMD4-213ENST00000565834 PSTPIP2Q9H939 334 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 SLC38A10Q9HBR0 1119 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 POLR3EQ9NVU0 708 aa21.47■■□□□ 1.03
COMMD4-213ENST00000565834 ZBED4O75132 1171 aa21.46■■□□□ 1.03
COMMD4-213ENST00000565834 GJA5P36382 358 aa21.46■■□□□ 1.03
COMMD4-213ENST00000565834 COG2Q14746 738 aa21.46■■□□□ 1.03
COMMD4-213ENST00000565834 NOM1Q5C9Z4 860 aaKnown RBP21.46■■□□□ 1.03
COMMD4-213ENST00000565834 TREML2Q5T2D2 321 aa21.46■■□□□ 1.03
COMMD4-213ENST00000565834 ANO1Q5XXA6 986 aa21.46■■□□□ 1.03
COMMD4-213ENST00000565834 CLIC4Q9Y696 253 aa21.46■■□□□ 1.03
COMMD4-213ENST00000565834 ELP1O95163 1332 aa21.45■■□□□ 1.02
COMMD4-213ENST00000565834 MYPNQ86TC9 1320 aa21.45■■□□□ 1.02
COMMD4-213ENST00000565834 ICAM1P05362 532 aa21.45■■□□□ 1.02
COMMD4-213ENST00000565834 DSG3P32926 999 aa21.45■■□□□ 1.02
COMMD4-213ENST00000565834 TOB1P50616 345 aaPredicted RBP21.45■■□□□ 1.02
COMMD4-213ENST00000565834 SNAPC2Q13487 334 aa21.45■■□□□ 1.02
COMMD4-213ENST00000565834 KRT25Q7Z3Z0 450 aa21.45■■□□□ 1.02
COMMD4-213ENST00000565834 ATG4CQ96DT6 458 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms