RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 CPXCR1Q8N123 301 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 SRBD1Q8N5C6 995 aaKnown RBP11.42□□□□□ -0.58
CLK3-208ENST00000562626 GPRC5AQ8NFJ5 357 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 SPATC1LQ9H0A9 340 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 NCOA5Q9HCD5 579 aaKnown RBP11.42□□□□□ -0.58
CLK3-208ENST00000562626 VAT1LQ9HCJ6 419 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 HOXC10Q9NYD6 342 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 TPCN1Q9ULQ1 816 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 GABRQQ9UN88 632 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 SLC12A7Q9Y666 1083 aa11.42□□□□□ -0.58
CLK3-208ENST00000562626 CNTNAP5Q8WYK1 1306 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 PDE4DIPQ5VU43 2346 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 hCG_1642624A0A1W2PR95 340 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 GOLGA8BA8MQT2 603 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 ZBTB43O43298 467 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 PPFIA3O75145 1194 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 PDIA3P30101 505 aaKnown RBP11.41□□□□□ -0.58
CLK3-208ENST00000562626 PSMC4P43686 418 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 NEK4P51957 841 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 SNRNP48Q6IEG0 339 aaKnown RBP11.41□□□□□ -0.58
CLK3-208ENST00000562626 TMTC3Q6ZXV5 915 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 FANCBQ8NB91 859 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 CHURC1Q8WUH1 139 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 PIBF1Q8WXW3 757 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 MTMR8Q96EF0 704 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 PIGSQ96S52 555 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 ALDH8A1Q9H2A2 487 aaPredicted RBP11.41□□□□□ -0.58
CLK3-208ENST00000562626 RIOX1Q9H6W3 641 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 NAP1L2Q9ULW6 460 aaPredicted RBP11.41□□□□□ -0.58
CLK3-208ENST00000562626 WDR81Q562E7 1941 aa11.41□□□□□ -0.58
CLK3-208ENST00000562626 GOLGA8AA7E2F4 631 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 ERCC3P19447 782 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 ADD1P35611 737 aaKnown RBP11.4□□□□□ -0.58
CLK3-208ENST00000562626 STAT3P40763 770 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 SLC4A3P48751 1232 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 CCT2P78371 535 aaKnown RBP11.4□□□□□ -0.58
CLK3-208ENST00000562626 FGD1P98174 961 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 STK3Q13188 491 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 CDC37Q16543 378 aaPredicted RBP11.4□□□□□ -0.58
CLK3-208ENST00000562626 QRICH1Q2TAL8 776 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 MUM1L1Q5H9M0 696 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 OTOP1Q7RTM1 612 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 RIOX2Q8IUF8 465 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 TMTC2Q8N394 836 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 CCDC82Q8N4S0 544 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 GTF3C2Q8WUA4 911 aaPredicted RBP11.4□□□□□ -0.58
CLK3-208ENST00000562626 MAP3K14Q99558 947 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 CENPFP49454 3210 aa11.4□□□□□ -0.58
CLK3-208ENST00000562626 ATP2A1O14983 1001 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 EIF5BO60841 1220 aaKnown RBP11.39□□□□□ -0.59
CLK3-208ENST00000562626 ZBED4O75132 1171 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 PRKCZQ05513 592 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 NTRK3Q16288 839 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 ME3Q16798 604 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 RTN1Q16799 776 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 GPR142Q7Z601 462 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 HOMER1Q86YM7 354 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 MB21D1Q8N884 522 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 NECAB1Q8N987 351 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 CTCFLQ8NI51 663 aaPredicted RBP11.39□□□□□ -0.59
CLK3-208ENST00000562626 SHISA4Q96DD7 197 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 ERO1AQ96HE7 468 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 HOMER2Q9NSB8 354 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 GJD2Q9UKL4 321 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 TRIM17Q9Y577 477 aa11.39□□□□□ -0.59
CLK3-208ENST00000562626 TNPO2O14787 897 aaKnown RBP11.38□□□□□ -0.59
CLK3-208ENST00000562626 OPLAHO14841 1288 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 DHX16O60231 1041 aaKnown RBP11.38□□□□□ -0.59
CLK3-208ENST00000562626 FMNL1O95466 1100 aaPredicted RBP11.38□□□□□ -0.59
CLK3-208ENST00000562626 ICAM1P05362 532 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 CALM1P0DP23 149 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 CALM2P0DP24 149 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 CALM3P0DP25 149 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 ALAS1P13196 640 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 METAP2P50579 478 aaKnown RBP eCLIP11.38□□□□□ -0.59
CLK3-208ENST00000562626 OAZ1P54368 228 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 SCRN1Q12765 414 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 USH1GQ495M9 461 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 MORN1Q5T089 497 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 WDR78Q5VTH9 848 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 NCAPG2Q86XI2 1143 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 CLEC4DQ8WXI8 215 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 TBC1D5Q92609 795 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 USP6NLQ92738 828 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 PURBQ96QR8 312 aaKnown RBP11.38□□□□□ -0.59
CLK3-208ENST00000562626 SPZ1Q9BXG8 430 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 TEX13BQ9BXU2 312 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 CCPG1Q9ULG6 757 aa11.38□□□□□ -0.59
CLK3-208ENST00000562626 MYH15Q9Y2K3 1946 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 DLL1O00548 723 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 NFIBO00712 420 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 ADAMTS3O15072 1205 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 COBLO75128 1261 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 CTDNEP1O95476 244 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 PGK2P07205 417 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 PTPREP23469 700 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 KIF5BP33176 963 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 FCGRTP55899 365 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 RABEP1Q15276 862 aa11.37□□□□□ -0.59
CLK3-208ENST00000562626 TYW1BQ6NUM6 668 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms