RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 IRX5P78411 483 aaPredicted RBP22.57■■□□□ 1.2
VPS35-202ENST00000561713 CCSAPQ6IQ19 270 aaPredicted RBP22.57■■□□□ 1.2
VPS35-202ENST00000561713 CPXCR1Q8N123 301 aa22.57■■□□□ 1.2
VPS35-202ENST00000561713 MSL3Q8N5Y2 521 aaKnown RBP22.57■■□□□ 1.2
VPS35-202ENST00000561713 NUP133Q8WUM0 1156 aa22.57■■□□□ 1.2
VPS35-202ENST00000561713 DDX11Q96FC9 970 aa22.57■■□□□ 1.2
VPS35-202ENST00000561713 ZHX1Q9UKY1 873 aaPredicted RBP22.57■■□□□ 1.2
VPS35-202ENST00000561713 SYNGAP1Q96PV0 1343 aa22.57■■□□□ 1.2
VPS35-202ENST00000561713 DNAJC25-GNG10A0A024R161 153 aa22.56■■□□□ 1.2
VPS35-202ENST00000561713 TTLL1O95922 423 aa22.56■■□□□ 1.2
VPS35-202ENST00000561713 DNAJB2P25686 324 aa22.56■■□□□ 1.2
VPS35-202ENST00000561713 PDE1AP54750 535 aa22.56■■□□□ 1.2
VPS35-202ENST00000561713 MAMDC4Q6UXC1 1216 aa22.56■■□□□ 1.2
VPS35-202ENST00000561713 LNPKQ9C0E8 428 aa22.56■■□□□ 1.2
VPS35-202ENST00000561713 ZNF287Q9HBT7 754 aa22.56■■□□□ 1.2
VPS35-202ENST00000561713 RAVER2Q9HCJ3 691 aaKnown RBP22.56■■□□□ 1.2
VPS35-202ENST00000561713 CHD9Q3L8U1 2897 aa22.55■■□□□ 1.2
VPS35-202ENST00000561713 A0A0D9SFI3 127 aa22.55■■□□□ 1.2
VPS35-202ENST00000561713 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.55■■□□□ 1.2
VPS35-202ENST00000561713 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.55■■□□□ 1.2
VPS35-202ENST00000561713 MOXD2PA6NHM9 499 aa22.55■■□□□ 1.2
VPS35-202ENST00000561713 TIMP1P01033 207 aa22.55■■□□□ 1.2
VPS35-202ENST00000561713 TFAP4Q01664 338 aa22.55■■□□□ 1.2
VPS35-202ENST00000561713 PDE4BQ07343 736 aa22.55■■□□□ 1.2
VPS35-202ENST00000561713 HDAC1Q13547 482 aaPredicted RBP22.55■■□□□ 1.2
VPS35-202ENST00000561713 PRPF38AQ8NAV1 312 aaKnown RBP22.55■■□□□ 1.2
VPS35-202ENST00000561713 NEDD1Q8NHV4 660 aa22.55■■□□□ 1.2
VPS35-202ENST00000561713 FAM227BQ96M60 508 aa22.55■■□□□ 1.2
VPS35-202ENST00000561713 TBX21Q9UL17 535 aa22.55■■□□□ 1.2
VPS35-202ENST00000561713 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.55■■□□□ 1.2
VPS35-202ENST00000561713 ADCY6O43306 1168 aa22.54■■□□□ 1.2
VPS35-202ENST00000561713 NMT2O60551 498 aa22.54■■□□□ 1.2
VPS35-202ENST00000561713 DUSP11O75319 330 aaKnown RBP22.54■■□□□ 1.2
VPS35-202ENST00000561713 SLFN13Q68D06 897 aa22.54■■□□□ 1.2
VPS35-202ENST00000561713 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.54■■□□□ 1.24e-6■■■□□ 14.6
VPS35-202ENST00000561713 SLC3A2P08195 630 aaKnown RBP22.53■■□□□ 1.2
VPS35-202ENST00000561713 ACVR2BQ13705 512 aa22.53■■□□□ 1.2
VPS35-202ENST00000561713 B4GALNT3Q6L9W6 998 aa22.53■■□□□ 1.2
VPS35-202ENST00000561713 USP38Q8NB14 1042 aa22.53■■□□□ 1.2
VPS35-202ENST00000561713 GMCL1P1Q8NEA9 526 aa22.53■■□□□ 1.2
VPS35-202ENST00000561713 EVI5LQ96CN4 794 aa22.53■■□□□ 1.2
VPS35-202ENST00000561713 ZNF576Q9H609 170 aa22.53■■□□□ 1.2
VPS35-202ENST00000561713 MTMR7Q9Y216 660 aa22.53■■□□□ 1.2
VPS35-202ENST00000561713 TTC28Q96AY4 2481 aa22.53■■□□□ 1.2
VPS35-202ENST00000561713 ATP2A1O14983 1001 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 ZBED4O75132 1171 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 ASGR1P07306 291 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 C6orf222P0C671 652 aaPredicted RBP22.52■■□□□ 1.2
VPS35-202ENST00000561713 CDK7P50613 346 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 MFSD5Q6N075 450 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 C16orf59Q7L2K0 433 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 ZNF467Q7Z7K2 595 aaPredicted RBP22.52■■□□□ 1.2
VPS35-202ENST00000561713 MKL1Q969V6 931 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 FGD4Q96M96 766 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 GLT1D1Q96MS3 346 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 HOMER2Q9NSB8 354 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 CDKN2AIPQ9NXV6 580 aaPredicted RBP22.52■■□□□ 1.2
VPS35-202ENST00000561713 CTDP1Q9Y5B0 961 aaPredicted RBP22.52■■□□□ 1.2
VPS35-202ENST00000561713 ELP1O95163 1332 aa22.52■■□□□ 1.2
VPS35-202ENST00000561713 BMP3P12645 472 aa22.51■■□□□ 1.19
VPS35-202ENST00000561713 CST5P28325 142 aaPredicted RBP22.51■■□□□ 1.19
VPS35-202ENST00000561713 CCDC144BQ3MJ40 725 aa22.51■■□□□ 1.19
VPS35-202ENST00000561713 ZNF589Q86UQ0 364 aaPredicted RBP22.51■■□□□ 1.19
VPS35-202ENST00000561713 ANKRD35Q8N283 1001 aa22.51■■□□□ 1.19
VPS35-202ENST00000561713 VTI1AQ96AJ9 217 aa22.51■■□□□ 1.19
VPS35-202ENST00000561713 TIFAQ96CG3 184 aa22.51■■□□□ 1.19
VPS35-202ENST00000561713 SLC38A10Q9HBR0 1119 aa22.51■■□□□ 1.19
VPS35-202ENST00000561713 PRDM6Q9NQX0 595 aa22.51■■□□□ 1.19
VPS35-202ENST00000561713 STX8Q9UNK0 236 aa22.51■■□□□ 1.19
VPS35-202ENST00000561713 TSPY2A6NKD2 308 aa22.5■■□□□ 1.19
VPS35-202ENST00000561713 TMEM232C9JQI7 657 aa22.5■■□□□ 1.19
VPS35-202ENST00000561713 SNAP25P60880 206 aa22.5■■□□□ 1.19
VPS35-202ENST00000561713 NMIQ13287 307 aaPredicted RBP22.5■■□□□ 1.19
VPS35-202ENST00000561713 PCSK9Q8NBP7 692 aaKnown RBP22.5■■□□□ 1.19
VPS35-202ENST00000561713 SYMPKQ92797 1274 aaKnown RBP22.5■■□□□ 1.19
VPS35-202ENST00000561713 ABHD16BQ9H3Z7 469 aa22.5■■□□□ 1.19
VPS35-202ENST00000561713 FEM1BQ9UK73 627 aa22.5■■□□□ 1.19
VPS35-202ENST00000561713 MROH7Q68CQ1 1323 aa22.5■■□□□ 1.19
VPS35-202ENST00000561713 GRXCR1A8MXD5 290 aa22.49■■□□□ 1.19
VPS35-202ENST00000561713 RANBP6O60518 1105 aaKnown RBP22.49■■□□□ 1.19
VPS35-202ENST00000561713 CSF2RAP15509 400 aa22.49■■□□□ 1.19
VPS35-202ENST00000561713 PBX2P40425 430 aa22.49■■□□□ 1.19
VPS35-202ENST00000561713 GJA9P57773 515 aa22.49■■□□□ 1.19
VPS35-202ENST00000561713 IKQ13123 557 aaPredicted RBP22.49■■□□□ 1.19
VPS35-202ENST00000561713 GNASQ5JWF2 1037 aa22.49■■□□□ 1.19
VPS35-202ENST00000561713 TMEM240Q5SV17 173 aa22.49■■□□□ 1.19
VPS35-202ENST00000561713 KCTD1Q719H9 257 aa22.49■■□□□ 1.19
VPS35-202ENST00000561713 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.49■■□□□ 1.19
VPS35-202ENST00000561713 UPF3AQ9H1J1 476 aaKnown RBP22.49■■□□□ 1.19
VPS35-202ENST00000561713 IL17RBQ9NRM6 502 aa22.49■■□□□ 1.19
VPS35-202ENST00000561713 TRIM6-TRIM34B2RNG4 842 aa22.48■■□□□ 1.19
VPS35-202ENST00000561713 ARVCFO00192 962 aa22.48■■□□□ 1.19
VPS35-202ENST00000561713 MCCP23508 829 aa22.48■■□□□ 1.19
VPS35-202ENST00000561713 PPIGQ13427 754 aaKnown RBP eCLIP22.48■■□□□ 1.19
VPS35-202ENST00000561713 RRP12Q5JTH9 1297 aaKnown RBP22.48■■□□□ 1.19
VPS35-202ENST00000561713 ARMCX2Q7L311 632 aa22.48■■□□□ 1.19
VPS35-202ENST00000561713 CCDC144CPQ8IYA2 1237 aa22.48■■□□□ 1.19
VPS35-202ENST00000561713 EXOC6Q8TAG9 804 aa22.48■■□□□ 1.19
VPS35-202ENST00000561713 PBX4Q9BYU1 374 aa22.48■■□□□ 1.19
VPS35-202ENST00000561713 SPC25Q9HBM1 224 aa22.48■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms