RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 NAT16Q8N8M0 369 aa8.08□□□□□ -1.12
VPS13C-208ENST00000559119 RELTQ969Z4 430 aa8.08□□□□□ -1.12
VPS13C-208ENST00000559119 KCNC2Q96PR1 638 aa8.08□□□□□ -1.12
VPS13C-208ENST00000559119 KLHL14Q9P2G3 628 aa8.08□□□□□ -1.12
VPS13C-208ENST00000559119 NUDT19A8MXV4 375 aa8.07□□□□□ -1.12
VPS13C-208ENST00000559119 CDR1P51861 262 aa8.07□□□□□ -1.12
VPS13C-208ENST00000559119 MZB1Q8WU39 189 aa8.07□□□□□ -1.12
VPS13C-208ENST00000559119 FERD3LQ96RJ6 166 aa8.07□□□□□ -1.12
VPS13C-208ENST00000559119 ACSL6Q9UKU0 697 aa8.07□□□□□ -1.12
VPS13C-208ENST00000559119 ZNRF3Q9ULT6 936 aa8.07□□□□□ -1.12
VPS13C-208ENST00000559119 C9IYK1 514 aa8.06□□□□□ -1.12
VPS13C-208ENST00000559119 TRIM13O60858 407 aa8.06□□□□□ -1.12
VPS13C-208ENST00000559119 SASH1O94885 1247 aa8.06□□□□□ -1.12
VPS13C-208ENST00000559119 GSTM1P09488 218 aa8.06□□□□□ -1.12
VPS13C-208ENST00000559119 ZNF76P36508 570 aa8.06□□□□□ -1.12
VPS13C-208ENST00000559119 BUD31P41223 144 aaPredicted RBP8.06□□□□□ -1.12
VPS13C-208ENST00000559119 NOL9Q5SY16 702 aaKnown RBP8.06□□□□□ -1.12
VPS13C-208ENST00000559119 CNKSR3Q6P9H4 555 aa8.06□□□□□ -1.12
VPS13C-208ENST00000559119 SMARCC1Q92922 1105 aaPredicted RBP8.06□□□□□ -1.12
VPS13C-208ENST00000559119 DACT3Q96B18 629 aaPredicted RBP8.06□□□□□ -1.12
VPS13C-208ENST00000559119 IMPACTQ9P2X3 320 aa8.06□□□□□ -1.12
VPS13C-208ENST00000559119 IRS4O14654 1257 aaPredicted RBP8.05□□□□□ -1.12
VPS13C-208ENST00000559119 ACRP10323 421 aa8.05□□□□□ -1.12
VPS13C-208ENST00000559119 TDRD10Q5VZ19 366 aaKnown RBP8.05□□□□□ -1.12
VPS13C-208ENST00000559119 FBXW10Q5XX13 1052 aa8.05□□□□□ -1.12
VPS13C-208ENST00000559119 USP48Q86UV5 1035 aa8.05□□□□□ -1.12
VPS13C-208ENST00000559119 LDHDQ86WU2 507 aa8.05□□□□□ -1.12
VPS13C-208ENST00000559119 JMJD8Q96S16 334 aa8.05□□□□□ -1.12
VPS13C-208ENST00000559119 KRTAP4-2Q9BYR5 136 aa8.05□□□□□ -1.12
VPS13C-208ENST00000559119 PMS1P54277 932 aaKnown RBP8.04□□□□□ -1.12
VPS13C-208ENST00000559119 RTP2Q5QGT7 225 aa8.04□□□□□ -1.12
VPS13C-208ENST00000559119 HLA-DQA1Q5Y7H0 255 aa8.04□□□□□ -1.12
VPS13C-208ENST00000559119 JAMLQ86YT9 394 aa8.04□□□□□ -1.12
VPS13C-208ENST00000559119 TAB3Q8N5C8 712 aaPredicted RBP8.04□□□□□ -1.12
VPS13C-208ENST00000559119 TMEM52Q8NDY8 209 aa8.04□□□□□ -1.12
VPS13C-208ENST00000559119 TM9SF2Q99805 663 aa8.04□□□□□ -1.12
VPS13C-208ENST00000559119 TNFRSF12AQ9NP84 129 aa8.04□□□□□ -1.12
VPS13C-208ENST00000559119 A0A0G2JLL6 359 aaPredicted RBP8.03□□□□□ -1.12
VPS13C-208ENST00000559119 SHOXO15266 292 aa8.03□□□□□ -1.12
VPS13C-208ENST00000559119 ZNF16P17020 682 aaPredicted RBP8.03□□□□□ -1.12
VPS13C-208ENST00000559119 NFIXQ14938 502 aa8.03□□□□□ -1.12
VPS13C-208ENST00000559119 TMEFF1Q8IYR6 380 aa8.03□□□□□ -1.12
VPS13C-208ENST00000559119 SLC12A9Q9BXP2 914 aa8.03□□□□□ -1.12
VPS13C-208ENST00000559119 EPB41L4AQ9HCS5 686 aaPredicted RBP8.03□□□□□ -1.12
VPS13C-208ENST00000559119 A0A1W2PQJ5 194 aa8.02□□□□□ -1.13
VPS13C-208ENST00000559119 H0Y8X5 98 aa8.02□□□□□ -1.13
VPS13C-208ENST00000559119 NOP2P46087 812 aaKnown RBP8.02□□□□□ -1.13
VPS13C-208ENST00000559119 CEBPAP49715 358 aaPredicted RBP8.02□□□□□ -1.13
VPS13C-208ENST00000559119 CBX2Q14781 532 aaPredicted RBP8.02□□□□□ -1.13
VPS13C-208ENST00000559119 NR1I3Q14994 352 aa8.02□□□□□ -1.13
VPS13C-208ENST00000559119 ANKRD39Q53RE8 183 aa8.02□□□□□ -1.13
VPS13C-208ENST00000559119 LDLRAD1Q5T700 205 aa8.02□□□□□ -1.13
VPS13C-208ENST00000559119 DCAF15Q66K64 600 aa8.02□□□□□ -1.13
VPS13C-208ENST00000559119 RPTNQ6XPR3 784 aa8.02□□□□□ -1.13
VPS13C-208ENST00000559119 FAM129CQ86XR2 697 aa8.02□□□□□ -1.13
VPS13C-208ENST00000559119 IGDCC3Q8IVU1 814 aa8.02□□□□□ -1.13
VPS13C-208ENST00000559119 ADAMTS20P59510 1910 aa8.01□□□□□ -1.13
VPS13C-208ENST00000559119 FOXD2O60548 495 aaPredicted RBP8.01□□□□□ -1.13
VPS13C-208ENST00000559119 BUB1BO60566 1050 aaPredicted RBP8.01□□□□□ -1.13
VPS13C-208ENST00000559119 TP53P04637 393 aaPredicted RBP8.01□□□□□ -1.13
VPS13C-208ENST00000559119 NCKAP1LP55160 1127 aa8.01□□□□□ -1.13
VPS13C-208ENST00000559119 VMACQ2NL98 169 aa8.01□□□□□ -1.13
VPS13C-208ENST00000559119 ZC3H14Q6PJT7 736 aaKnown RBP8.01□□□□□ -1.13
VPS13C-208ENST00000559119 CYP2R1Q6VVX0 501 aa8.01□□□□□ -1.13
VPS13C-208ENST00000559119 PPFIBP1Q86W92 1011 aa8.01□□□□□ -1.13
VPS13C-208ENST00000559119 BRF1Q92994 677 aa8.01□□□□□ -1.13
VPS13C-208ENST00000559119 BACH2Q9BYV9 841 aa8.01□□□□□ -1.13
VPS13C-208ENST00000559119 GP6Q9HCN6 339 aa8.01□□□□□ -1.13
VPS13C-208ENST00000559119 FAM86C1Q9NVL1 165 aa8.01□□□□□ -1.13
VPS13C-208ENST00000559119 SF3B6Q9Y3B4 125 aaKnown RBP8.01□□□□□ -1.13
VPS13C-208ENST00000559119 PCDHA5Q9Y5H7 936 aa8.01□□□□□ -1.13
VPS13C-208ENST00000559119 MAPKAPK2P49137 400 aa8□□□□□ -1.13
VPS13C-208ENST00000559119 ZNF445P59923 1031 aa8□□□□□ -1.13
VPS13C-208ENST00000559119 MVKQ03426 396 aa8□□□□□ -1.13
VPS13C-208ENST00000559119 PLEKHN1Q494U1 663 aaPredicted RBP8□□□□□ -1.13
VPS13C-208ENST00000559119 ZNF394Q53GI3 561 aa8□□□□□ -1.13
VPS13C-208ENST00000559119 AXDND1Q5T1B0 1012 aaPredicted RBP8□□□□□ -1.13
VPS13C-208ENST00000559119 SP8Q8IXZ3 490 aa8□□□□□ -1.13
VPS13C-208ENST00000559119 RGS22Q8NE09 1264 aa8□□□□□ -1.13
VPS13C-208ENST00000559119 PWWP2AQ96N64 755 aa8□□□□□ -1.13
VPS13C-208ENST00000559119 METTL5Q9NRN9 209 aaKnown RBP8□□□□□ -1.13
VPS13C-208ENST00000559119 RTEL1Q9NZ71 1219 aa8□□□□□ -1.13
VPS13C-208ENST00000559119 PCDHGB7Q9Y5F8 929 aa8□□□□□ -1.13
VPS13C-208ENST00000559119 FHOD1Q9Y613 1164 aa8□□□□□ -1.13
VPS13C-208ENST00000559119 ITGA4P13612 1032 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 SYN1P17600 705 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 PFKLP17858 780 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 CD247P20963 164 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 GUCY2CP25092 1073 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 FANCCQ00597 558 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 UNC5AQ6ZN44 842 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 FIBCD1Q8N539 461 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 SRRTQ9BXP5 876 aaKnown RBP7.99□□□□□ -1.13
VPS13C-208ENST00000559119 KRTAP4-11Q9BYQ6 195 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 XYLT2Q9H1B5 865 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 PPT2Q9UMR5 302 aa7.99□□□□□ -1.13
VPS13C-208ENST00000559119 OTOL1A6NHN0 477 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-208ENST00000559119 FGF10O15520 208 aaPredicted RBP7.98□□□□□ -1.13
VPS13C-208ENST00000559119 MSL3P1P0C860 447 aa7.98□□□□□ -1.13
VPS13C-208ENST00000559119 ZNF200P98182 395 aaPredicted RBP7.98□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms