RNA–Protein interactions for RNA: ENST00000557358.1

VPS33B-206, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 4

Gene VPS33B, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-206ENST00000557358 ENAHQ8N8S7 591 aaPredicted RBP16.16■□□□□ 0.18
VPS33B-206ENST00000557358 ANKS1AQ92625 1134 aa16.16■□□□□ 0.18
VPS33B-206ENST00000557358 HOMER2Q9NSB8 354 aa16.16■□□□□ 0.18
VPS33B-206ENST00000557358 CNPY2Q9Y2B0 182 aa16.16■□□□□ 0.18
VPS33B-206ENST00000557358 PFASO15067 1338 aa16.16■□□□□ 0.18
VPS33B-206ENST00000557358 E7EWF7 191 aa16.15■□□□□ 0.18
VPS33B-206ENST00000557358 COBLO75128 1261 aa16.15■□□□□ 0.18
VPS33B-206ENST00000557358 PARP1P09874 1014 aaKnown RBP16.15■□□□□ 0.18
VPS33B-206ENST00000557358 MAML3Q96JK9 1138 aa16.15■□□□□ 0.18
VPS33B-206ENST00000557358 TRERF1Q96PN7 1200 aa16.15■□□□□ 0.18
VPS33B-206ENST00000557358 CRISPLD2Q9H0B8 497 aa16.15■□□□□ 0.18
VPS33B-206ENST00000557358 RNF146Q9NTX7 359 aa16.15■□□□□ 0.18
VPS33B-206ENST00000557358 NRBP1Q9UHY1 535 aa16.15■□□□□ 0.18
VPS33B-206ENST00000557358 ICAM1P05362 532 aa16.14■□□□□ 0.17
VPS33B-206ENST00000557358 PGK2P07205 417 aa16.14■□□□□ 0.17
VPS33B-206ENST00000557358 CYP2C19P33261 490 aa16.14■□□□□ 0.17
VPS33B-206ENST00000557358 SLC16A2P36021 539 aa16.14■□□□□ 0.17
VPS33B-206ENST00000557358 WTAPQ15007 396 aa16.14■□□□□ 0.17
VPS33B-206ENST00000557358 NECAB2Q7Z6G3 386 aa16.14■□□□□ 0.17
VPS33B-206ENST00000557358 RANBP17Q9H2T7 1088 aaKnown RBP16.14■□□□□ 0.17
VPS33B-206ENST00000557358 FLRT1Q9NZU1 646 aa16.14■□□□□ 0.17
VPS33B-206ENST00000557358 RIPK3Q9Y572 518 aa16.14■□□□□ 0.17
VPS33B-206ENST00000557358 POTEB2H3BUK9 544 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 SNHG28P0DPA3 235 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 CCND3P30281 292 aaPredicted RBP16.13■□□□□ 0.17
VPS33B-206ENST00000557358 ZNF792Q3KQV3 632 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 TTBK2Q6IQ55 1244 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.13■□□□□ 0.17
VPS33B-206ENST00000557358 CATIPQ7Z7H3 387 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 TMTC2Q8N394 836 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 DPF3Q92784 378 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 SHISA4Q96DD7 197 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 AGBL1Q96MI9 1066 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 MPHOSPH6Q99547 160 aaKnown RBP16.13■□□□□ 0.17
VPS33B-206ENST00000557358 TINF2Q9BSI4 451 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 LSG1Q9H089 658 aaKnown RBP16.13■□□□□ 0.17
VPS33B-206ENST00000557358 DDX20Q9UHI6 824 aaKnown RBP16.13■□□□□ 0.17
VPS33B-206ENST00000557358 PLXNA1Q9UIW2 1896 aa16.13■□□□□ 0.17
VPS33B-206ENST00000557358 MCM5P33992 734 aa16.12■□□□□ 0.17
VPS33B-206ENST00000557358 TRAF1Q13077 416 aa16.12■□□□□ 0.17
VPS33B-206ENST00000557358 TMEM67Q5HYA8 995 aa16.12■□□□□ 0.17
VPS33B-206ENST00000557358 ZNF467Q7Z7K2 595 aaPredicted RBP16.12■□□□□ 0.17
VPS33B-206ENST00000557358 SKAP1Q86WV1 359 aa16.12■□□□□ 0.17
VPS33B-206ENST00000557358 MTA3Q9BTC8 594 aa16.12■□□□□ 0.17
VPS33B-206ENST00000557358 OGDHLQ9ULD0 1010 aa16.12■□□□□ 0.17
VPS33B-206ENST00000557358 SEPT4O43236 478 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 REC8O95072 547 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 GOLGA8HP0CJ92 632 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 KRT32Q14532 448 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 PRPF38BQ5VTL8 546 aaKnown RBP16.11■□□□□ 0.17
VPS33B-206ENST00000557358 CREB3L3Q68CJ9 461 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 NSMFQ6X4W1 530 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 NFXL1Q6ZNB6 911 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 CYB5R4Q7L1T6 521 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 RASGRP2Q7LDG7 609 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 ARRDC4Q8NCT1 418 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 NR2E3Q9Y5X4 410 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 SYNGAP1Q96PV0 1343 aa16.11■□□□□ 0.17
VPS33B-206ENST00000557358 ASB14A6NK59 587 aa16.1■□□□□ 0.17
VPS33B-206ENST00000557358 B4DLN1 442 aa16.1■□□□□ 0.17
VPS33B-206ENST00000557358 SLC27A2O14975 620 aa16.1■□□□□ 0.17
VPS33B-206ENST00000557358 CYBAP13498 195 aa16.1■□□□□ 0.17
VPS33B-206ENST00000557358 MRPL12P52815 198 aaKnown RBP16.1■□□□□ 0.17
VPS33B-206ENST00000557358 SNAP25P60880 206 aa16.1■□□□□ 0.17
VPS33B-206ENST00000557358 SEC23AQ15436 765 aa16.1■□□□□ 0.17
VPS33B-206ENST00000557358 TMEM87BQ96K49 555 aa16.1■□□□□ 0.17
VPS33B-206ENST00000557358 ADD3Q9UEY8 706 aaKnown RBP16.1■□□□□ 0.17
VPS33B-206ENST00000557358 ZNF536O15090 1300 aa16.1■□□□□ 0.17
VPS33B-206ENST00000557358 WDR19Q8NEZ3 1342 aa16.1■□□□□ 0.17
VPS33B-206ENST00000557358 DNAJC25-GNG10A0A024R161 153 aa16.09■□□□□ 0.17
VPS33B-206ENST00000557358 PTPDC1A2A3K4 754 aa16.09■□□□□ 0.17
VPS33B-206ENST00000557358 CCDC69A6NI79 296 aa16.09■□□□□ 0.17
VPS33B-206ENST00000557358 KBTBD13C9JR72 458 aa16.09■□□□□ 0.17
VPS33B-206ENST00000557358 RARBP10826 455 aa16.09■□□□□ 0.17
VPS33B-206ENST00000557358 AKR1A1P14550 325 aa16.09■□□□□ 0.17
VPS33B-206ENST00000557358 KIF5BP33176 963 aa16.09■□□□□ 0.17
VPS33B-206ENST00000557358 SYNE3Q6ZMZ3 975 aa16.09■□□□□ 0.17
VPS33B-206ENST00000557358 PAWRQ96IZ0 340 aaKnown RBP16.09■□□□□ 0.17
VPS33B-206ENST00000557358 UBA5Q9GZZ9 404 aa16.09■□□□□ 0.17
VPS33B-206ENST00000557358 C11orf49Q9H6J7 331 aa16.09■□□□□ 0.17
VPS33B-206ENST00000557358 A1CFQ9NQ94 594 aaKnown RBP16.09■□□□□ 0.17
VPS33B-206ENST00000557358 MYH6P13533 1939 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 KLRF2D3W0D1 207 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 PRC1O43663 620 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 EIF5BO60841 1220 aaKnown RBP16.08■□□□□ 0.16
VPS33B-206ENST00000557358 MYCNP04198 464 aaPredicted RBP16.08■□□□□ 0.16
VPS33B-206ENST00000557358 HMGB1P09429 215 aaKnown RBP16.08■□□□□ 0.16
VPS33B-206ENST00000557358 NECTIN1Q15223 517 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 CDC37Q16543 378 aaPredicted RBP16.08■□□□□ 0.16
VPS33B-206ENST00000557358 MAMDC4Q6UXC1 1216 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 CHST3Q7LGC8 479 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 MCF2L2Q86YR7 1114 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 MB21D2Q8IYB1 491 aaPredicted RBP16.08■□□□□ 0.16
VPS33B-206ENST00000557358 ADGRF4Q8IZF3 695 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 CTCFLQ8NI51 663 aaPredicted RBP16.08■□□□□ 0.16
VPS33B-206ENST00000557358 MAF1Q9H063 256 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 ABHD16BQ9H3Z7 469 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 SPC25Q9HBM1 224 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 VAT1LQ9HCJ6 419 aa16.08■□□□□ 0.16
VPS33B-206ENST00000557358 ZHX1Q9UKY1 873 aaPredicted RBP16.08■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms