RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 UBE2OQ9C0C9 1292 aaKnown RBP12.94□□□□□ -0.34
SYNE2-227ENST00000557307 KATNBL1Q9H079 304 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 ZNF287Q9HBT7 754 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 XPNPEP3Q9NQH7 507 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 SLC5A4Q9NY91 659 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 DIS3Q9Y2L1 958 aaKnown RBP12.94□□□□□ -0.34
SYNE2-227ENST00000557307 CDH23Q9H251 3354 aa12.94□□□□□ -0.34
SYNE2-227ENST00000557307 FRMPD2Q68DX3 1309 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-227ENST00000557307 SOWAHBA6NEL2 793 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 KBTBD13C9JR72 458 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 SLC3A2P08195 630 aaKnown RBP12.93□□□□□ -0.34
SYNE2-227ENST00000557307 SLC16A2P36021 539 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 STAT2P52630 851 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 NUCB1Q02818 461 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 SNX17Q15036 470 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 RCSD1Q6JBY9 416 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 TDHQ8IZJ6 230 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 A1CFQ9NQ94 594 aaKnown RBP12.93□□□□□ -0.34
SYNE2-227ENST00000557307 PDLIM7Q9NR12 457 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 TOMM22Q9NS69 142 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 RNF146Q9NTX7 359 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-227ENST00000557307 ZBTB47Q9UFB7 747 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-227ENST00000557307 ZHX1Q9UKY1 873 aaPredicted RBP12.93□□□□□ -0.34
SYNE2-227ENST00000557307 PRR12Q9ULL5 1215 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 SYNPO2Q9UMS6 1093 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 PHF24Q9UPV7 400 aa12.93□□□□□ -0.34
SYNE2-227ENST00000557307 ZMYM6O95789 1325 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 C11orf97A0A1B0GVM6 126 aaPredicted RBP12.92□□□□□ -0.34
SYNE2-227ENST00000557307 A0A1W2PQ45 241 aaPredicted RBP12.92□□□□□ -0.34
SYNE2-227ENST00000557307 A0A1W2PQY0 241 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 TRIM43BA6NCK2 446 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 RARBP10826 455 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 AKR1A1P14550 325 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 SDSP20132 328 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 COPB2P35606 906 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 SLC1A4P43007 532 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 MAMDC4Q6UXC1 1216 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 ANKRD35Q8N283 1001 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 ARRDC4Q8NCT1 418 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 STAG1Q8WVM7 1258 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 GBF1Q92538 1859 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 TRIM43Q96BQ3 446 aaPredicted RBP12.92□□□□□ -0.34
SYNE2-227ENST00000557307 DDX11Q96FC9 970 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 TMEM47Q9BQJ4 181 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 ZKSCAN3Q9BRR0 538 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 OSBPL3Q9H4L5 887 aa12.92□□□□□ -0.34
SYNE2-227ENST00000557307 PRDM5Q9NQX1 630 aaPredicted RBP12.92□□□□□ -0.34
SYNE2-227ENST00000557307 SUPT16HQ9Y5B9 1047 aaKnown RBP12.92□□□□□ -0.34
SYNE2-227ENST00000557307 SYNGAP1Q96PV0 1343 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 CTAGE5O15320 804 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 ALAS1P13196 640 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 OAZ1P54368 228 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 IKQ13123 557 aaPredicted RBP12.91□□□□□ -0.34
SYNE2-227ENST00000557307 CCDC96Q2M329 555 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 C9orf50Q5SZB4 431 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 CCSAPQ6IQ19 270 aaPredicted RBP12.91□□□□□ -0.34
SYNE2-227ENST00000557307 ARMCX2Q7L311 632 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 CCDC144CPQ8IYA2 1237 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 FAM133AQ8N9E0 248 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 CPVLQ9H3G5 476 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 RWDD1Q9H446 243 aaPredicted RBP12.91□□□□□ -0.34
SYNE2-227ENST00000557307 NRBP1Q9UHY1 535 aa12.91□□□□□ -0.34
SYNE2-227ENST00000557307 CTDP1Q9Y5B0 961 aaPredicted RBP12.91□□□□□ -0.34
SYNE2-227ENST00000557307 GSPT1P15170 499 aaKnown RBP12.9□□□□□ -0.34
SYNE2-227ENST00000557307 TLE2Q04725 743 aa12.9□□□□□ -0.34
SYNE2-227ENST00000557307 ACVR2BQ13705 512 aa12.9□□□□□ -0.34
SYNE2-227ENST00000557307 LRIT3Q3SXY7 679 aa12.9□□□□□ -0.34
SYNE2-227ENST00000557307 CWC27Q6UX04 472 aaKnown RBP12.9□□□□□ -0.34
SYNE2-227ENST00000557307 FAM160B2Q86V87 743 aa12.9□□□□□ -0.34
SYNE2-227ENST00000557307 KLHDC9Q8NEP7 349 aa12.9□□□□□ -0.34
SYNE2-227ENST00000557307 CHST13Q8NET6 341 aa12.9□□□□□ -0.34
SYNE2-227ENST00000557307 BADQ92934 168 aa12.9□□□□□ -0.34
SYNE2-227ENST00000557307 ACAD9Q9H845 621 aa12.9□□□□□ -0.34
SYNE2-227ENST00000557307 GPCPD1Q9NPB8 672 aa12.9□□□□□ -0.34
SYNE2-227ENST00000557307 CNPY2Q9Y2B0 182 aa12.9□□□□□ -0.34
SYNE2-227ENST00000557307 UNC80Q8N2C7 3258 aa12.89□□□□□ -0.35
SYNE2-227ENST00000557307 NFIBO00712 420 aa12.89□□□□□ -0.35
SYNE2-227ENST00000557307 PLA2G6O60733 806 aa12.89□□□□□ -0.35
SYNE2-227ENST00000557307 EPHB4P54760 987 aa12.89□□□□□ -0.35
SYNE2-227ENST00000557307 CCDC144BQ3MJ40 725 aa12.89□□□□□ -0.35
SYNE2-227ENST00000557307 AKNAD1Q5T1N1 836 aa12.89□□□□□ -0.35
SYNE2-227ENST00000557307 ZNF467Q7Z7K2 595 aaPredicted RBP12.89□□□□□ -0.35
SYNE2-227ENST00000557307 DCAF4Q8WV16 495 aa12.89□□□□□ -0.35
SYNE2-227ENST00000557307 TRERF1Q96PN7 1200 aa12.89□□□□□ -0.35
SYNE2-227ENST00000557307 RANBP17Q9H2T7 1088 aaKnown RBP12.89□□□□□ -0.35
SYNE2-227ENST00000557307 PDGFCQ9NRA1 345 aa12.89□□□□□ -0.35
SYNE2-227ENST00000557307 KIAA1217Q5T5P2 1943 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 POTEB2H3BUK9 544 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 RBAK-RBAKDNI3L0D1 243 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 PQBP1O60828 265 aaKnown RBP12.88□□□□□ -0.35
SYNE2-227ENST00000557307 GOLGA8HP0CJ92 632 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 PDHBP11177 359 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 ACLYP53396 1101 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 BEX3Q00994 111 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 KCNA10Q16322 511 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 SYDE2Q5VT97 1194 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 SLC30A10Q6XR72 485 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 EEPD1Q7L9B9 569 aa12.88□□□□□ -0.35
SYNE2-227ENST00000557307 RNF180Q86T96 592 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms