RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 COG2Q14746 738 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 GALNT17Q6IS24 598 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 NBPF11Q86T75 865 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 FBXO11Q86XK2 927 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 REM2Q8IYK8 340 aaPredicted RBP12.9□□□□□ -0.34
SHMT2-220ENST00000555634 C6orf50Q9HD87 102 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 PLXNB2O15031 1838 aa12.9□□□□□ -0.34
SHMT2-220ENST00000555634 ABCB11O95342 1321 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 COPB2P35606 906 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 FOSBP53539 338 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 OAZ1P54368 228 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 NLRP5P59047 1200 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 GRM1Q13255 1194 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 MCTP1Q6DN14 999 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 TTBK2Q6IQ55 1244 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 CATSPERGQ6ZRH7 1159 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 TEX2Q8IWB9 1127 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 CUL5Q93034 780 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 PIGSQ96S52 555 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 RANBP17Q9H2T7 1088 aaKnown RBP12.89□□□□□ -0.35
SHMT2-220ENST00000555634 JMJD4Q9H9V9 463 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 ZCCHC17Q9NP64 241 aaKnown RBP12.89□□□□□ -0.35
SHMT2-220ENST00000555634 BARHL2Q9NY43 387 aa12.89□□□□□ -0.35
SHMT2-220ENST00000555634 THSD7BQ9C0I4 1608 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 PPFIA3O75145 1194 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 HOXA7P31268 230 aaPredicted RBP12.88□□□□□ -0.35
SHMT2-220ENST00000555634 KRT2P35908 639 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 ADCY7P51828 1080 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 NOGQ13253 232 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 QRICH1Q2TAL8 776 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 MCTP2Q6DN12 878 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 CCDC174Q6PII3 467 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 ANKRD23Q86SG2 305 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 CCAR1Q8IX12 1150 aaKnown RBP12.88□□□□□ -0.35
SHMT2-220ENST00000555634 CPVLQ9H3G5 476 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 EHMT1Q9H9B1 1298 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 CCPG1Q9ULG6 757 aa12.88□□□□□ -0.35
SHMT2-220ENST00000555634 CYTH3O43739 400 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 ICAM1P05362 532 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 SYT1P21579 422 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 GCLCP48506 637 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-220ENST00000555634 CCNA1P78396 465 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 FUT2Q10981 343 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 USH1GQ495M9 461 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 KIAA1755Q5JYT7 1200 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 TREML2Q5T2D2 321 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 WWC2Q6AWC2 1192 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 GPKOWQ92917 476 aaPredicted RBP eCLIP12.87□□□□□ -0.35
SHMT2-220ENST00000555634 TEX13BQ9BXU2 312 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 ZSCAN16Q9H4T2 348 aaPredicted RBP12.87□□□□□ -0.35
SHMT2-220ENST00000555634 FBXO28Q9NVF7 368 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 VPS54Q9P1Q0 977 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 MRPL11Q9Y3B7 192 aaKnown RBP12.87□□□□□ -0.35
SHMT2-220ENST00000555634 PCDHA1Q9Y5I3 950 aa12.87□□□□□ -0.35
SHMT2-220ENST00000555634 hCG_1642624A0A1W2PR95 340 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 ESYT2A0FGR8 921 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 PDHXO00330 501 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 VWA5AO00534 786 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 SLC34A2O95436 690 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 ALDH1A1P00352 501 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 MMP1P03956 469 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 ZSCAN22P10073 491 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-220ENST00000555634 DSG3P32926 999 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 GJA5P36382 358 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 MRPL12P52815 198 aaKnown RBP12.86□□□□□ -0.35
SHMT2-220ENST00000555634 DGKZQ13574 1117 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 PLS1Q14651 629 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 DEFB115Q30KQ5 88 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 TKFCQ3LXA3 575 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 KRT40Q6A162 431 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 BRAPQ7Z569 592 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 MCF2L2Q86YR7 1114 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 REXO1Q8N1G1 1221 aaKnown RBP12.86□□□□□ -0.35
SHMT2-220ENST00000555634 FBXO18Q8NFZ0 1043 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 ATG4CQ96DT6 458 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 MTMR8Q96EF0 704 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 ASCC2Q9H1I8 757 aaPredicted RBP12.86□□□□□ -0.35
SHMT2-220ENST00000555634 SLC38A10Q9HBR0 1119 aa12.86□□□□□ -0.35
SHMT2-220ENST00000555634 NOL7Q9UMY1 257 aaKnown RBP12.86□□□□□ -0.35
SHMT2-220ENST00000555634 MGAMO43451 1857 aa12.85□□□□□ -0.35
SHMT2-220ENST00000555634 PLXNA1Q9UIW2 1896 aa12.85□□□□□ -0.35
SHMT2-220ENST00000555634 CCDC194A0A1B0GVG4 234 aa12.85□□□□□ -0.35
SHMT2-220ENST00000555634 RASSF10A6NK89 507 aa12.85□□□□□ -0.35
SHMT2-220ENST00000555634 SPDYE16A6NNV3 312 aaPredicted RBP12.85□□□□□ -0.35
SHMT2-220ENST00000555634 STXBP3O00186 592 aa12.85□□□□□ -0.35
SHMT2-220ENST00000555634 FDPSP14324 419 aaKnown RBP12.85□□□□□ -0.35
SHMT2-220ENST00000555634 HERVK_113P62684 666 aa12.85□□□□□ -0.35
SHMT2-220ENST00000555634 SNRNP48Q6IEG0 339 aaKnown RBP12.85□□□□□ -0.35
SHMT2-220ENST00000555634 CPXCR1Q8N123 301 aa12.85□□□□□ -0.35
SHMT2-220ENST00000555634 GBP4Q96PP9 640 aa12.85□□□□□ -0.35
SHMT2-220ENST00000555634 PAGR1Q9BTK6 254 aa12.85□□□□□ -0.35
SHMT2-220ENST00000555634 FBXO40Q9UH90 709 aa12.85□□□□□ -0.35
SHMT2-220ENST00000555634 ZNF236Q9UL36 1845 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 SMCO2A6NFE2 343 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 ALAS1P13196 640 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 GUCY1B3Q02153 619 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 TAF1CQ15572 869 aaPredicted RBP12.84□□□□□ -0.35
SHMT2-220ENST00000555634 PKN1Q16512 942 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 CSPP1Q1MSJ5 1256 aa12.84□□□□□ -0.35
SHMT2-220ENST00000555634 LBX2Q6XYB7 198 aa12.84□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms