RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 GRM4Q14833 912 aa16.6■□□□□ 0.25
SHMT2-217ENST00000555116 CCDC174Q6PII3 467 aa16.6■□□□□ 0.25
SHMT2-217ENST00000555116 DHX30Q7L2E3 1194 aaKnown RBP eCLIP16.6■□□□□ 0.25
SHMT2-217ENST00000555116 APBA2Q99767 749 aa16.6■□□□□ 0.25
SHMT2-217ENST00000555116 UBA5Q9GZZ9 404 aa16.6■□□□□ 0.25
SHMT2-217ENST00000555116 MAD2L2Q9UI95 211 aa16.6■□□□□ 0.25
SHMT2-217ENST00000555116 PALM3A6NDB9 673 aaPredicted RBP16.59■□□□□ 0.25
SHMT2-217ENST00000555116 COBLO75128 1261 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 FCER1AP12319 257 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 SLC4A3P48751 1232 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 TMTC2Q8N394 836 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 NPLOC4Q8TAT6 608 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 TRIB2Q92519 343 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 TCEANC2Q96MN5 208 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 MMP19Q99542 508 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 ICAM1P05362 532 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 CCL14Q16627 93 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 CATIPQ7Z7H3 387 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 ZNF654Q8IZM8 581 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 CHST13Q8NET6 341 aa16.59■□□□□ 0.25
SHMT2-217ENST00000555116 JAKMIP1Q96N16 626 aaKnown RBP16.59■□□□□ 0.25
SHMT2-217ENST00000555116 CAPN15O75808 1086 aa16.58■□□□□ 0.24
SHMT2-217ENST00000555116 DDAH1O94760 285 aa16.58■□□□□ 0.24
SHMT2-217ENST00000555116 INHAP05111 366 aa16.58■□□□□ 0.24
SHMT2-217ENST00000555116 HMGB1P09429 215 aaKnown RBP16.58■□□□□ 0.24
SHMT2-217ENST00000555116 CPA1P15085 419 aa16.58■□□□□ 0.24
SHMT2-217ENST00000555116 TAL1P17542 331 aaPredicted RBP16.58■□□□□ 0.24
SHMT2-217ENST00000555116 TKFCQ3LXA3 575 aa16.58■□□□□ 0.24
SHMT2-217ENST00000555116 IFFO2Q5TF58 517 aa16.58■□□□□ 0.24
SHMT2-217ENST00000555116 SGMS1Q86VZ5 419 aa16.58■□□□□ 0.24
SHMT2-217ENST00000555116 ADGRF4Q8IZF3 695 aa16.58■□□□□ 0.24
SHMT2-217ENST00000555116 LCTP09848 1927 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 MCM3APO60318 1980 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 KLRF2D3W0D1 207 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 IGHA2P01877 340 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 HMGCRP04035 888 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 MTFR1Q15390 333 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 SLC35G1Q2M3R5 365 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 TRMT44Q8IYL2 757 aaKnown RBP16.57■□□□□ 0.24
SHMT2-217ENST00000555116 MAP3K14Q99558 947 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 MYL10Q9BUA6 226 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 RNF146Q9NTX7 359 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 FLRT1Q9NZU1 646 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 BIN2Q9UBW5 565 aaPredicted RBP16.57■□□□□ 0.24
SHMT2-217ENST00000555116 FBXO40Q9UH90 709 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 CCPG1Q9ULG6 757 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 CENPFP49454 3210 aa16.57■□□□□ 0.24
SHMT2-217ENST00000555116 CCDC69A6NI79 296 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 ALAS1P13196 640 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 TRIM32Q13049 653 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 KCTD2Q14681 263 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 NFXL1Q6ZNB6 911 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 DPP9Q86TI2 863 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 NUP133Q8WUM0 1156 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 JMJD4Q9H9V9 463 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 HOMER2Q9NSB8 354 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 SEC24BO95487 1268 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 MYCP01106 439 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-217ENST00000555116 PGK2P07205 417 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 UBXN2AP68543 259 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 CDC37Q16543 378 aaPredicted RBP16.56■□□□□ 0.24
SHMT2-217ENST00000555116 BLOC1S2Q6QNY1 142 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 MTMR8Q96EF0 704 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 TRERF1Q96PN7 1200 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 ACAD9Q9H845 621 aa16.56■□□□□ 0.24
SHMT2-217ENST00000555116 DNAJC25-GNG10A0A024R161 153 aa16.55■□□□□ 0.24
SHMT2-217ENST00000555116 RPS6KB1P23443 525 aa16.55■□□□□ 0.24
SHMT2-217ENST00000555116 PSMA5P28066 241 aa16.55■□□□□ 0.24
SHMT2-217ENST00000555116 ANP32AP39687 249 aaKnown RBP16.55■□□□□ 0.24
SHMT2-217ENST00000555116 ZNF792Q3KQV3 632 aa16.55■□□□□ 0.24
SHMT2-217ENST00000555116 C8orf34Q49A92 452 aa16.55■□□□□ 0.24
SHMT2-217ENST00000555116 MUM1L1Q5H9M0 696 aa16.55■□□□□ 0.24
SHMT2-217ENST00000555116 RIOX1Q9H6W3 641 aa16.55■□□□□ 0.24
SHMT2-217ENST00000555116 PNMA2Q9UL42 364 aa16.55■□□□□ 0.24
SHMT2-217ENST00000555116 CCL5P13501 91 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 CASTP20810 708 aaKnown RBP16.54■□□□□ 0.24
SHMT2-217ENST00000555116 SOX10P56693 466 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 MAP3K21Q5TCX8 1036 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 OLFML2BQ68BL8 750 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 UNC93B1Q9H1C4 597 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 VAT1LQ9HCJ6 419 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 SLC5A4Q9NY91 659 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 BRPF3Q9ULD4 1205 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 DIS3Q9Y2L1 958 aaKnown RBP16.54■□□□□ 0.24
SHMT2-217ENST00000555116 SLC12A7Q9Y666 1083 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 CYTH3O43739 400 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 DHX16O60231 1041 aaKnown RBP16.54■□□□□ 0.24
SHMT2-217ENST00000555116 EIF5BO60841 1220 aaKnown RBP16.54■□□□□ 0.24
SHMT2-217ENST00000555116 QRICH1Q2TAL8 776 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 APOA5Q6Q788 366 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 RAB11FIP4Q86YS3 637 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 CLEC4DQ8WXI8 215 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 DDX11Q96FC9 970 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 MAML3Q96JK9 1138 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 TM6SF1Q9BZW5 370 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 ZSWIM6Q9HCJ5 1215 aa16.54■□□□□ 0.24
SHMT2-217ENST00000555116 A1CFQ9NQ94 594 aaKnown RBP16.54■□□□□ 0.24
SHMT2-217ENST00000555116 POTEFA5A3E0 1075 aa16.53■□□□□ 0.24
SHMT2-217ENST00000555116 CALM1P0DP23 149 aa16.53■□□□□ 0.24
SHMT2-217ENST00000555116 CALM2P0DP24 149 aa16.53■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms