RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 GPATCH4Q5T3I0 446 aaKnown RBP18.86■□□□□ 0.61
CCDC88C-209ENST00000554872 RASGRP2Q7LDG7 609 aa18.86■□□□□ 0.61
CCDC88C-209ENST00000554872 DDX11Q96FC9 970 aa18.86■□□□□ 0.61
CCDC88C-209ENST00000554872 B4E1Z4 1266 aa18.85■□□□□ 0.61
CCDC88C-209ENST00000554872 EVI5O60447 810 aa18.85■□□□□ 0.61
CCDC88C-209ENST00000554872 CNGA1P29973 690 aa18.85■□□□□ 0.61
CCDC88C-209ENST00000554872 SYDE2Q5VT97 1194 aa18.85■□□□□ 0.61
CCDC88C-209ENST00000554872 ANKRD35Q8N283 1001 aa18.85■□□□□ 0.61
CCDC88C-209ENST00000554872 FGD4Q96M96 766 aa18.85■□□□□ 0.61
CCDC88C-209ENST00000554872 ZSCAN10Q96SZ4 725 aaPredicted RBP18.85■□□□□ 0.61
CCDC88C-209ENST00000554872 RNF146Q9NTX7 359 aa18.85■□□□□ 0.61
CCDC88C-209ENST00000554872 ZSWIM5Q9P217 1185 aa18.85■□□□□ 0.61
CCDC88C-209ENST00000554872 U3KPZ7 1027 aaPredicted RBP18.85■□□□□ 0.61
CCDC88C-209ENST00000554872 RANBP2P49792 3224 aaKnown RBP18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 WDR19Q8NEZ3 1342 aa18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 ZNF865P0CJ78 1059 aaPredicted RBP18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 ENAHQ8N8S7 591 aaPredicted RBP18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 FAM133AQ8N9E0 248 aa18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 ARRDC4Q8NCT1 418 aa18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 AGBL1Q96MI9 1066 aa18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 PRO3102Q9H379 93 aa18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 A1CFQ9NQ94 594 aaKnown RBP18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 ISY1Q9ULR0 285 aaKnown RBP18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 CNPY2Q9Y2B0 182 aa18.84■□□□□ 0.61
CCDC88C-209ENST00000554872 BMP2KLQ5H9B9 411 aa18.83■□□□□ 0.6
CCDC88C-209ENST00000554872 PNMA1Q8ND90 353 aa18.83■□□□□ 0.6
CCDC88C-209ENST00000554872 MAP4K1Q92918 833 aa18.83■□□□□ 0.6
CCDC88C-209ENST00000554872 MAF1Q9H063 256 aa18.83■□□□□ 0.6
CCDC88C-209ENST00000554872 DNAH12Q6ZR08 3092 aa18.83■□□□□ 0.6
CCDC88C-209ENST00000554872 TNKSO95271 1327 aa18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 LOC102724159A0A0B4J2E5 919 aa18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 SNAI1O95863 264 aaPredicted RBP18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 CYP21A2P08686 494 aa18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 AKR1A1P14550 325 aa18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 PTH1RQ03431 593 aa18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 PWP2Q15269 919 aaKnown RBP18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 PRAMEF19Q5SWL8 479 aa18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 TTBK2Q6IQ55 1244 aa18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 TRERF1Q96PN7 1200 aa18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 UBAC1Q9BSL1 405 aa18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 CCPG1Q9ULG6 757 aa18.82■□□□□ 0.6
CCDC88C-209ENST00000554872 FRMPD2Q68DX3 1309 aaPredicted RBP18.81■□□□□ 0.6
CCDC88C-209ENST00000554872 SLC34A2O95436 690 aa18.81■□□□□ 0.6
CCDC88C-209ENST00000554872 RARBP10826 455 aa18.81■□□□□ 0.6
CCDC88C-209ENST00000554872 SEC23AQ15436 765 aa18.81■□□□□ 0.6
CCDC88C-209ENST00000554872 ASPRV1Q53RT3 343 aa18.81■□□□□ 0.6
CCDC88C-209ENST00000554872 HABP4Q5JVS0 413 aaKnown RBP18.81■□□□□ 0.6
CCDC88C-209ENST00000554872 ZKSCAN3Q9BRR0 538 aa18.81■□□□□ 0.6
CCDC88C-209ENST00000554872 ABHD16BQ9H3Z7 469 aa18.81■□□□□ 0.6
CCDC88C-209ENST00000554872 KAT14Q9H8E8 782 aa18.81■□□□□ 0.6
CCDC88C-209ENST00000554872 HOMER2Q9NSB8 354 aa18.81■□□□□ 0.6
CCDC88C-209ENST00000554872 POTEB2H3BUK9 544 aa18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 ALAS1P13196 640 aa18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 TAL1P17542 331 aaPredicted RBP18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 SLC16A2P36021 539 aa18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 TRDNQ13061 729 aa18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 CCDC174Q6PII3 467 aa18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 KATNBL1Q9H079 304 aa18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 GPCPD1Q9NPB8 672 aa18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 CYP39A1Q9NYL5 469 aa18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 MTMR7Q9Y216 660 aa18.8■□□□□ 0.6
CCDC88C-209ENST00000554872 A0A1W2PPC1 479 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 ASB14A6NK59 587 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 KBTBD13C9JR72 458 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 SLC4A3P48751 1232 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 SNX17Q15036 470 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 LRRC41Q15345 812 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 MUM1L1Q5H9M0 696 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 C1orf53Q5VUE5 145 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 ARMCX2Q7L311 632 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 MORC4Q8TE76 937 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 XPNPEP3Q9NQH7 507 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 FAM184BQ9ULE4 1060 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 COLQQ9Y215 455 aaPredicted RBP18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 LRRC37A2A6NM11 1700 aa18.79■□□□□ 0.6
CCDC88C-209ENST00000554872 ADAMTS4O75173 837 aa18.78■□□□□ 0.6
CCDC88C-209ENST00000554872 NKX3-2P78367 333 aa18.78■□□□□ 0.6
CCDC88C-209ENST00000554872 ACVR2BQ13705 512 aa18.78■□□□□ 0.6
CCDC88C-209ENST00000554872 LRRC26Q2I0M4 334 aa18.78■□□□□ 0.6
CCDC88C-209ENST00000554872 IFIT1BQ5T764 474 aaKnown RBP18.78■□□□□ 0.6
CCDC88C-209ENST00000554872 CHMP4CQ96CF2 233 aa18.78■□□□□ 0.6
CCDC88C-209ENST00000554872 MTA3Q9BTC8 594 aa18.78■□□□□ 0.6
CCDC88C-209ENST00000554872 PHF24Q9UPV7 400 aa18.78■□□□□ 0.6
CCDC88C-209ENST00000554872 LCTP09848 1927 aa18.78■□□□□ 0.6
CCDC88C-209ENST00000554872 ASTN1O14525 1302 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 SOWAHBA6NEL2 793 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 E7EWF7 191 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 DUSP11O75319 330 aaKnown RBP18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 CST5P28325 142 aaPredicted RBP18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 SNAP25P60880 206 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 CNTN2Q02246 1040 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 CYB5R4Q7L1T6 521 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 RNF180Q86T96 592 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 CCDC144CPQ8IYA2 1237 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 C7orf61Q8IZ16 206 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 RGS22Q8NE09 1264 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 NCOA7Q8NI08 942 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 CLEC4DQ8WXI8 215 aa18.77■□□□□ 0.6
CCDC88C-209ENST00000554872 ESYT1Q9BSJ8 1104 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms