RNA–Protein interactions for RNA: ENST00000553576.5

VIPAS39-204, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-204ENST00000553576 CHAF1AQ13111 956 aaPredicted RBP6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 TRIM29Q14134 588 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 STK38Q15208 465 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 PLA2G4EQ3MJ16 856 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 RRP12Q5JTH9 1297 aaKnown RBP6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 IFIT1BQ5T764 474 aaKnown RBP6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 CCDC73Q6ZRK6 1079 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 CATIPQ7Z7H3 387 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 ZSCAN30Q86W11 494 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 BPHLQ86WA6 291 aaPredicted RBP6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 COL23A1Q86Y22 540 aaPredicted RBP6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 VWA5B2Q8N398 1253 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 JMYQ8N9B5 988 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 FAM200AQ8TCP9 573 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 BICD2Q8TD16 824 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 MRPS27Q92552 414 aaKnown RBP6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 PHKBQ93100 1093 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 AIFM3Q96NN9 605 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 ZKSCAN3Q9BRR0 538 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 SLC26A6Q9BXS9 759 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 RTFDC1Q9BY42 306 aaPredicted RBP6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 COA1Q9GZY4 146 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 RRAGDQ9NQL2 400 aaPredicted RBP6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 TOMM22Q9NS69 142 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 MRVI1Q9Y6F6 885 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 MROH7-TTC4A0A0A0MT08 1334 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 GAKO14976 1311 aa6.94□□□□□ -1.3
VIPAS39-204ENST00000553576 ZNF646O15015 1829 aaPredicted RBP6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 PSME4Q14997 1843 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 CYP2D7A0A087X1C5 515 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 SMIM22K7EJ46 135 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 CUTAO60888 179 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 UFL1O94874 794 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 XBP1P17861 261 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 RXRAP19793 462 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 SMARCA1P28370 1054 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 ME1P48163 572 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 NOVP48745 357 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 CEBPZQ03701 1054 aaKnown RBP6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 SAFBQ15424 915 aaKnown RBP eCLIP6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 SF3A1Q15459 793 aaKnown RBP6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 PKN1Q16512 942 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 RILPL1Q5EBL4 403 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 RCSD1Q6JBY9 416 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 SASS6Q6UVJ0 657 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 RAB11FIP4Q86YS3 637 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 NOSTRINQ8IVI9 506 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 KRI1Q8N9T8 703 aaKnown RBP6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 FSIP1Q8NA03 581 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 RNF214Q8ND24 703 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 MASTLQ96GX5 879 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 SPOCK3Q9BQ16 436 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 NOL10Q9BSC4 688 aaKnown RBP6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 MYL10Q9BUA6 226 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 C1QTNF2Q9BXJ5 285 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 FTOQ9C0B1 505 aaKnown RBP eCLIP6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 GOLPH3LQ9H4A5 285 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 ZNF287Q9HBT7 754 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 GJB4Q9NTQ9 266 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 CCDC39Q9UFE4 941 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 USP25Q9UHP3 1055 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 HPSEQ9Y251 543 aa6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 COL11A2P13942 1736 aaPredicted RBP6.93□□□□□ -1.3
VIPAS39-204ENST00000553576 SLX4Q8IY92 1834 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 CDC14CA4D256 554 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 BTBD18B2RXH4 712 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 ZNF500O60304 480 aaPredicted RBP6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 KINO60870 393 aaKnown RBP6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 WDHD1O75717 1129 aaPredicted RBP6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 ZNF202O95125 648 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 APBA3O96018 575 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 TPM3P06753 285 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 USP17L8P0C7I0 530 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 GUCY1A2P33402 732 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 USP5P45974 858 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 GNAQP50148 359 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 TOB1P50616 345 aaPredicted RBP6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 RHBDL3P58872 404 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 FKBP1AP62942 108 aaKnown RBP6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 AKAP17AQ02040 695 aaKnown RBP6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 IQCB1Q15051 598 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 GRIK5Q16478 980 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 CAMK4Q16566 473 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 ZNF827Q17R98 1081 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 LYPD4Q6UWN0 246 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 C16orf86Q6ZW13 317 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 TMTC3Q6ZXV5 915 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 SV2AQ7L0J3 742 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 AMOTL1Q8IY63 956 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 CCDC144CPQ8IYA2 1237 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 SH3RF3Q8TEJ3 882 aaPredicted RBP6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 PHF20Q9BVI0 1012 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 CBX8Q9HC52 389 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 SH3GLB2Q9NR46 395 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 IL17RBQ9NRM6 502 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 MCM9Q9NXL9 1143 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 MAP4K5Q9Y4K4 846 aa6.92□□□□□ -1.3
VIPAS39-204ENST00000553576 GREB1LQ9C091 1923 aaPredicted RBP6.91□□□□□ -1.3
VIPAS39-204ENST00000553576 MYH4Q9Y623 1939 aa6.91□□□□□ -1.3
VIPAS39-204ENST00000553576 A0A1B0GVL5 298 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms