RNA–Protein interactions for RNA: ENST00000553488.5

ATXN3-219, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 1,065 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-219ENST00000553488 ERVK-9P63128 1117 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 ERVK-24P63145 666 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 IRX3P78415 501 aaPredicted RBP8.98□□□□□ -0.97
ATXN3-219ENST00000553488 MVPQ14764 893 aaKnown RBP8.98□□□□□ -0.97
ATXN3-219ENST00000553488 LCE2CQ5TA81 110 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 TREML4Q6UXN2 200 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 GPR142Q7Z601 462 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 METTL16Q86W50 562 aaKnown RBP8.98□□□□□ -0.97
ATXN3-219ENST00000553488 MEIS3Q99687 375 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 AS3MTQ9HBK9 375 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 PRM3Q9NNZ6 103 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 RBPJLQ9UBG7 517 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 COG6Q9Y2V7 657 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 NAV1Q8NEY1 1877 aa8.98□□□□□ -0.97
ATXN3-219ENST00000553488 E9PSI1 815 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 ASNSP08243 561 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 MAPK4P31152 587 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 RGS2P41220 211 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 MCAMP43121 646 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 TFCP2Q12800 502 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 MTX1Q13505 466 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 TBC1D9Q6ZT07 1266 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 TEX11Q8IYF3 940 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 FAM9BQ8IZU0 186 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 SPATA5Q8NB90 893 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 GPRC5AQ8NFJ5 357 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 SH3RF3Q8TEJ3 882 aaPredicted RBP8.97□□□□□ -0.97
ATXN3-219ENST00000553488 SMC4Q9NTJ3 1288 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 ZBTB21Q9ULJ3 1066 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 MYO9BQ13459 2157 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 FLT1P17948 1338 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 MYH8P13535 1937 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 ZNFX1Q9P2E3 1918 aaKnown RBP8.97□□□□□ -0.97
ATXN3-219ENST00000553488 SMCHD1A6NHR9 2005 aa8.97□□□□□ -0.97
ATXN3-219ENST00000553488 TERTO14746 1132 aaKnown RBP8.96□□□□□ -0.98
ATXN3-219ENST00000553488 CNMDO75829 334 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 GDF11O95390 407 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 IGHA2P01877 340 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 LDHCP07864 332 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 BMP2P12643 396 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 GSTO1P78417 241 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 SLFN5Q08AF3 891 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 PDE3AQ14432 1141 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 C6orf118Q5T5N4 469 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 ADGRA1Q86SQ6 560 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 PHTF2Q8N3S3 785 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 GTF3C2Q8WUA4 911 aaPredicted RBP8.96□□□□□ -0.98
ATXN3-219ENST00000553488 TMOD4Q9NZQ9 345 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 FLRT1Q9NZU1 646 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 PI4KBQ9UBF8 816 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 AKAP2Q9Y2D5 859 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 COL11A1P12107 1806 aaPredicted RBP8.96□□□□□ -0.98
ATXN3-219ENST00000553488 PLXNA1Q9UIW2 1896 aa8.96□□□□□ -0.98
ATXN3-219ENST00000553488 BDP1A6H8Y1 2624 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 C19orf81C9J6K1 198 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 USP17L10C9JJH3 530 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 ANP32CO43423 234 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 UPP2O95045 317 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 ADH1AP07327 375 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 RAB15P59190 212 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 RNF20Q5VTR2 975 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 PLEKHH3Q7Z736 793 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 C12orf42Q96LP6 360 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 FAM161BQ96MY7 647 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 PAGR1Q9BTK6 254 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 DHX36Q9H2U1 1008 aaKnown RBP8.95□□□□□ -0.98
ATXN3-219ENST00000553488 GINM1Q9NU53 330 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 RAI14Q9P0K7 980 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 XIRP2A4UGR9 3374 aa8.95□□□□□ -0.98
ATXN3-219ENST00000553488 SOBPA7XYQ1 873 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 SRGAP3O43295 1099 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 HOXC6P09630 235 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 GRB14Q14449 540 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 MAPKAPK5Q8IW41 473 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 NPAS3Q8IXF0 933 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 TRMT2AQ8IZ69 625 aaKnown RBP8.94□□□□□ -0.98
ATXN3-219ENST00000553488 TRPV1Q8NER1 839 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 LPAR1Q92633 364 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 AGBL1Q96MI9 1066 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 AATFQ9NY61 560 aaKnown RBP eCLIP8.94□□□□□ -0.98
ATXN3-219ENST00000553488 NXF1Q9UBU9 619 aaKnown RBP8.94□□□□□ -0.98
ATXN3-219ENST00000553488 DDX20Q9UHI6 824 aaKnown RBP8.94□□□□□ -0.98
ATXN3-219ENST00000553488 DNMT3LQ9UJW3 386 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 NOB1Q9ULX3 412 aaKnown RBP8.94□□□□□ -0.98
ATXN3-219ENST00000553488 RABGAP1Q9Y3P9 1069 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 TRANK1O15050 2925 aa8.94□□□□□ -0.98
ATXN3-219ENST00000553488 DNM1LO00429 736 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 CYBAP13498 195 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 ABL2P42684 1182 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 RTP1P59025 263 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 VAC14Q08AM6 782 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 SNX17Q15036 470 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 C9orf50Q5SZB4 431 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 USP17L2Q6R6M4 530 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 LBX2Q6XYB7 198 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 TGFBRAP1Q8WUH2 860 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 POM121Q96HA1 1249 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 NEUROD6Q96NK8 337 aa8.93□□□□□ -0.98
ATXN3-219ENST00000553488 CDX2Q99626 313 aaPredicted RBP8.93□□□□□ -0.98
ATXN3-219ENST00000553488 API5Q9BZZ5 524 aaKnown RBP8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms