RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 API5Q9BZZ5 524 aaKnown RBP17.53■□□□□ 0.4
VPS29-209ENST00000551655 RNF216Q9NWF9 866 aaPredicted RBP17.53■□□□□ 0.4
VPS29-209ENST00000551655 DBNLQ9UJU6 430 aaKnown RBP17.53■□□□□ 0.4
VPS29-209ENST00000551655 PPP1R9AQ9ULJ8 1098 aa17.53■□□□□ 0.4
VPS29-209ENST00000551655 LPXNO60711 386 aa17.52■□□□□ 0.4
VPS29-209ENST00000551655 GNAI3P08754 354 aa17.52■□□□□ 0.4
VPS29-209ENST00000551655 ITGA7Q13683 1181 aa17.52■□□□□ 0.4
VPS29-209ENST00000551655 FAM83BQ5T0W9 1011 aa17.52■□□□□ 0.4
VPS29-209ENST00000551655 SNRNP48Q6IEG0 339 aaKnown RBP17.52■□□□□ 0.4
VPS29-209ENST00000551655 SDR42E1Q8WUS8 393 aa17.52■□□□□ 0.4
VPS29-209ENST00000551655 PHOX2BQ99453 314 aa17.52■□□□□ 0.4
VPS29-209ENST00000551655 PTPRSQ13332 1948 aa17.52■□□□□ 0.4
VPS29-209ENST00000551655 RBAK-RBAKDNI3L0D1 243 aa17.51■□□□□ 0.39
VPS29-209ENST00000551655 ARMCX2Q7L311 632 aa17.51■□□□□ 0.39
VPS29-209ENST00000551655 RPUSD2Q8IZ73 545 aaKnown RBP17.51■□□□□ 0.39
VPS29-209ENST00000551655 GJD3Q8N144 294 aa17.51■□□□□ 0.39
VPS29-209ENST00000551655 ZNF512BQ96KM6 892 aaPredicted RBP17.51■□□□□ 0.39
VPS29-209ENST00000551655 NUP88Q99567 741 aaPredicted RBP17.51■□□□□ 0.39
VPS29-209ENST00000551655 KATNBL1Q9H079 304 aa17.51■□□□□ 0.39
VPS29-209ENST00000551655 CCDC8Q9H0W5 538 aaPredicted RBP17.51■□□□□ 0.39
VPS29-209ENST00000551655 DDX49Q9Y6V7 483 aaKnown RBP17.51■□□□□ 0.39
VPS29-209ENST00000551655 MAGEB6P1A0A0J9YX57 407 aa17.5■□□□□ 0.39
VPS29-209ENST00000551655 E9PSI1 815 aa17.5■□□□□ 0.39
VPS29-209ENST00000551655 EEF2P13639 858 aaKnown RBP17.5■□□□□ 0.39
VPS29-209ENST00000551655 IL9P15248 144 aa17.5■□□□□ 0.39
VPS29-209ENST00000551655 CERS3Q8IU89 383 aa17.5■□□□□ 0.39
VPS29-209ENST00000551655 FAM178BQ8IXR5 827 aa17.5■□□□□ 0.39
VPS29-209ENST00000551655 GDPD5Q8WTR4 605 aa17.5■□□□□ 0.39
VPS29-209ENST00000551655 ABHD16BQ9H3Z7 469 aa17.5■□□□□ 0.39
VPS29-209ENST00000551655 SH2D4AQ9H788 454 aa17.5■□□□□ 0.39
VPS29-209ENST00000551655 GPR108Q9NPR9 543 aa17.5■□□□□ 0.39
VPS29-209ENST00000551655 USP34Q70CQ2 3546 aa17.5■□□□□ 0.39
VPS29-209ENST00000551655 BAZ2AQ9UIF9 1905 aaKnown RBP17.49■□□□□ 0.39
VPS29-209ENST00000551655 CYP2C9P11712 490 aa17.49■□□□□ 0.39
VPS29-209ENST00000551655 SSTR3P32745 418 aaPredicted RBP17.49■□□□□ 0.39
VPS29-209ENST00000551655 COPB2P35606 906 aa17.49■□□□□ 0.39
VPS29-209ENST00000551655 SLFN5Q08AF3 891 aa17.49■□□□□ 0.39
VPS29-209ENST00000551655 NOL8Q76FK4 1167 aaKnown RBP17.49■□□□□ 0.39
VPS29-209ENST00000551655 TEX13BQ9BXU2 312 aa17.49■□□□□ 0.39
VPS29-209ENST00000551655 TNNQ9UQP3 1299 aa17.49■□□□□ 0.39
VPS29-209ENST00000551655 CYP2D7A0A087X1C5 515 aa17.48■□□□□ 0.39
VPS29-209ENST00000551655 OS9Q13438 667 aaPredicted RBP17.48■□□□□ 0.39
VPS29-209ENST00000551655 CSPP1Q1MSJ5 1256 aa17.48■□□□□ 0.39
VPS29-209ENST00000551655 TMEM63BQ5T3F8 832 aa17.48■□□□□ 0.39
VPS29-209ENST00000551655 ZNF467Q7Z7K2 595 aaPredicted RBP17.48■□□□□ 0.39
VPS29-209ENST00000551655 CCDC144CPQ8IYA2 1237 aa17.48■□□□□ 0.39
VPS29-209ENST00000551655 CPXCR1Q8N123 301 aa17.48■□□□□ 0.39
VPS29-209ENST00000551655 DCP1AQ9NPI6 582 aaPredicted RBP17.48■□□□□ 0.39
VPS29-209ENST00000551655 TRMT13Q9NUP7 481 aaKnown RBP17.48■□□□□ 0.39
VPS29-209ENST00000551655 TRIOO75962 3097 aa17.47■□□□□ 0.39
VPS29-209ENST00000551655 LCHNA4D1U4 455 aa17.47■□□□□ 0.39
VPS29-209ENST00000551655 IGSF3O75054 1194 aa17.47■□□□□ 0.39
VPS29-209ENST00000551655 NKX3-2P78367 333 aa17.47■□□□□ 0.39
VPS29-209ENST00000551655 TNFAIP2Q03169 654 aa17.47■□□□□ 0.39
VPS29-209ENST00000551655 FSCN1Q16658 493 aaKnown RBP17.47■□□□□ 0.39
VPS29-209ENST00000551655 TMCO2Q7Z6W1 182 aaPredicted RBP17.47■□□□□ 0.39
VPS29-209ENST00000551655 TLK2Q86UE8 772 aa17.47■□□□□ 0.39
VPS29-209ENST00000551655 LCORLQ8N3X6 602 aa17.47■□□□□ 0.39
VPS29-209ENST00000551655 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.47■□□□□ 0.39
VPS29-209ENST00000551655 PPP1R13LQ8WUF5 828 aa17.47■□□□□ 0.39
VPS29-209ENST00000551655 CRNKL1Q9BZJ0 848 aaKnown RBP17.47■□□□□ 0.39
VPS29-209ENST00000551655 UBE2ZQ9H832 354 aaPredicted RBP17.47■□□□□ 0.39
VPS29-209ENST00000551655 CFAP54Q96N23 3096 aa17.46■□□□□ 0.39
VPS29-209ENST00000551655 GNAI2P04899 355 aa17.46■□□□□ 0.39
VPS29-209ENST00000551655 CNTN2Q02246 1040 aa17.46■□□□□ 0.39
VPS29-209ENST00000551655 HERC6Q8IVU3 1022 aa17.46■□□□□ 0.39
VPS29-209ENST00000551655 SLC9A7Q96T83 725 aa17.46■□□□□ 0.39
VPS29-209ENST00000551655 GNEQ9Y223 722 aaKnown RBP17.46■□□□□ 0.39
VPS29-209ENST00000551655 ZNF318Q5VUA4 2279 aa17.45■□□□□ 0.38
VPS29-209ENST00000551655 DYNC1LI2O43237 492 aaPredicted RBP17.45■□□□□ 0.38
VPS29-209ENST00000551655 PRKAB2O43741 272 aa17.45■□□□□ 0.38
VPS29-209ENST00000551655 KCNA5P22460 613 aa17.45■□□□□ 0.38
VPS29-209ENST00000551655 ANKRD35Q8N283 1001 aa17.45■□□□□ 0.38
VPS29-209ENST00000551655 EAF2Q96CJ1 260 aaPredicted RBP17.45■□□□□ 0.38
VPS29-209ENST00000551655 SLF1Q9BQI6 1058 aa17.45■□□□□ 0.38
VPS29-209ENST00000551655 ALDH8A1Q9H2A2 487 aaPredicted RBP17.45■□□□□ 0.38
VPS29-209ENST00000551655 RAVER2Q9HCJ3 691 aaKnown RBP17.45■□□□□ 0.38
VPS29-209ENST00000551655 SWAP70Q9UH65 585 aa17.45■□□□□ 0.38
VPS29-209ENST00000551655 MTUS1Q9ULD2 1270 aa17.45■□□□□ 0.38
VPS29-209ENST00000551655 TANC1Q9C0D5 1861 aa17.45■□□□□ 0.38
VPS29-209ENST00000551655 TET1Q8NFU7 2136 aa17.45■□□□□ 0.38
VPS29-209ENST00000551655 CABYRO75952 493 aa17.44■□□□□ 0.38
VPS29-209ENST00000551655 SMPD1P17405 629 aa17.44■□□□□ 0.38
VPS29-209ENST00000551655 SLFNL1Q499Z3 407 aa17.44■□□□□ 0.38
VPS29-209ENST00000551655 GOPCQ9HD26 462 aa17.44■□□□□ 0.38
VPS29-209ENST00000551655 PDGFCQ9NRA1 345 aa17.44■□□□□ 0.38
VPS29-209ENST00000551655 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.43■□□□□ 0.38
VPS29-209ENST00000551655 SURF6O75683 361 aaKnown RBP17.43■□□□□ 0.38
VPS29-209ENST00000551655 BCAR3O75815 825 aa17.43■□□□□ 0.38
VPS29-209ENST00000551655 PFKMP08237 780 aa17.43■□□□□ 0.38
VPS29-209ENST00000551655 ALADP13716 330 aa17.43■□□□□ 0.38
VPS29-209ENST00000551655 PDE6AP16499 860 aa17.43■□□□□ 0.38
VPS29-209ENST00000551655 CDK8P49336 464 aa17.43■□□□□ 0.38
VPS29-209ENST00000551655 POLA2Q14181 598 aa17.43■□□□□ 0.38
VPS29-209ENST00000551655 LEXMQ3ZCV2 418 aa17.43■□□□□ 0.38
VPS29-209ENST00000551655 PTCRAQ6ISU1 281 aaPredicted RBP17.43■□□□□ 0.38
VPS29-209ENST00000551655 ARMT1Q9H993 441 aa17.43■□□□□ 0.38
VPS29-209ENST00000551655 ZNF532Q9HCE3 1301 aa17.43■□□□□ 0.38
VPS29-209ENST00000551655 C5orf42Q9H799 3197 aa17.42■□□□□ 0.38
VPS29-209ENST00000551655 ACTN1P12814 892 aa17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms