RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 PRDM5Q9NQX1 630 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-204ENST00000549064 PRKAG2Q9UGJ0 569 aa8.14□□□□□ -1.11
LIMA1-204ENST00000549064 ATP11BQ9Y2G3 1177 aa8.14□□□□□ -1.11
LIMA1-204ENST00000549064 SUGT1Q9Y2Z0 365 aa8.14□□□□□ -1.11
LIMA1-204ENST00000549064 MYO9BQ13459 2157 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 A0A1W2PRU2 124 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 CTNND1O60716 968 aaKnown RBP8.13□□□□□ -1.11
LIMA1-204ENST00000549064 CALD1Q05682 793 aaKnown RBP8.13□□□□□ -1.11
LIMA1-204ENST00000549064 SPP2Q13103 211 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 COL19A1Q14993 1142 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 METTL24Q5JXM2 366 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 BEND3Q5T5X7 828 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 C16orf46Q6P387 395 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 VGLL2Q8N8G2 317 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 EHBP1Q8NDI1 1231 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 KAZALD1Q96I82 304 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 SUCLG2Q96I99 432 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 NECAB3Q96P71 396 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-204ENST00000549064 UHRF1Q96T88 793 aaPredicted RBP8.13□□□□□ -1.11
LIMA1-204ENST00000549064 RBCK1Q9BYM8 510 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 TXNRD2Q9NNW7 524 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 MORF4L1Q9UBU8 362 aa8.13□□□□□ -1.11
LIMA1-204ENST00000549064 RFX7Q2KHR2 1363 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 RNF223E7ERA6 249 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 GRM8O00222 908 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 NDUFB5O43674 189 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 XRCC5P13010 732 aaKnown RBP8.12□□□□□ -1.11
LIMA1-204ENST00000549064 ZEB1P37275 1124 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-204ENST00000549064 WNT7BP56706 349 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 MAP3K10Q02779 954 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 PDE3AQ14432 1141 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 RALBP1Q15311 655 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 KLHDC4Q8TBB5 520 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 SOCS4Q8WXH5 440 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 USP6NLQ92738 828 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 ASB2Q96Q27 587 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 PORCNQ9H237 461 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 DDX4Q9NQI0 724 aaKnown RBP8.12□□□□□ -1.11
LIMA1-204ENST00000549064 BRPF3Q9ULD4 1205 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 PLXNA1Q9UIW2 1896 aa8.12□□□□□ -1.11
LIMA1-204ENST00000549064 MYBBP1AQ9BQG0 1328 aaKnown RBP8.11□□□□□ -1.11
LIMA1-204ENST00000549064 REV3LO60673 3130 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 TRIM43BA6NCK2 446 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 ENTPD3O75355 529 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 PDE8BO95263 885 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 ITGB8P26012 769 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 EIF1AXP47813 144 aaKnown RBP8.11□□□□□ -1.11
LIMA1-204ENST00000549064 EPHB4P54760 987 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 PICALMQ13492 652 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 AAMPQ13685 434 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 RRP1BQ14684 758 aaKnown RBP8.11□□□□□ -1.11
LIMA1-204ENST00000549064 TRIM60Q495X7 471 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 GJC2Q5T442 439 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-204ENST00000549064 GPR142Q7Z601 462 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 SLC9A9Q8IVB4 645 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 ZNF280CQ8ND82 737 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 WDR66Q8TBY9 1149 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 TRIM43Q96BQ3 446 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-204ENST00000549064 RNPC3Q96LT9 517 aaKnown RBP8.11□□□□□ -1.11
LIMA1-204ENST00000549064 P2RX7Q99572 595 aaKnown RBP8.11□□□□□ -1.11
LIMA1-204ENST00000549064 IDI2Q9BXS1 227 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 PDLIM7Q9NR12 457 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 RAB6BQ9NRW1 208 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 FLRT1Q9NZU1 646 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 THEGQ9P2T0 379 aa8.11□□□□□ -1.11
LIMA1-204ENST00000549064 SYNGAP1Q96PV0 1343 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 DNM1LO00429 736 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 TNFRSF10BO14763 440 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 LDHBP07195 334 aaKnown RBP8.1□□□□□ -1.11
LIMA1-204ENST00000549064 FGFR2P21802 821 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 CNGA1P29973 690 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 RGS2P41220 211 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 GRM5P41594 1212 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 IRX3P78415 501 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-204ENST00000549064 PABPC4Q13310 644 aaKnown RBP eCLIP8.1□□□□□ -1.11
LIMA1-204ENST00000549064 CCDC85BQ15834 202 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-204ENST00000549064 COX20Q5RI15 118 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 SLC39A5Q6ZMH5 540 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 GPRC5AQ8NFJ5 357 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 ATXN2LQ8WWM7 1075 aaKnown RBP8.1□□□□□ -1.11
LIMA1-204ENST00000549064 APBA2Q99767 749 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 PAGR1Q9BTK6 254 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 ZNF576Q9H609 170 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 C9orf78Q9NZ63 289 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-204ENST00000549064 DDX20Q9UHI6 824 aaKnown RBP8.1□□□□□ -1.11
LIMA1-204ENST00000549064 SIPA1L1O43166 1804 aa8.1□□□□□ -1.11
LIMA1-204ENST00000549064 BDP1A6H8Y1 2624 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 GBF1Q92538 1859 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 TREHO43280 583 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 FZD6O60353 706 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 LILRA1O75019 489 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 IFIT1P09914 478 aaKnown RBP8.09□□□□□ -1.11
LIMA1-204ENST00000549064 NBPF7P0C2Y1 421 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-204ENST00000549064 MAPK4P31152 587 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 HERVK_113P62684 666 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 FOXK2Q01167 660 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 DHX9Q08211 1270 aaKnown RBP8.09□□□□□ -1.11
LIMA1-204ENST00000549064 ANO1Q5XXA6 986 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 CYP2U1Q7Z449 544 aa8.09□□□□□ -1.11
LIMA1-204ENST00000549064 PLEKHH3Q7Z736 793 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms