RNA–Protein interactions for RNA: ENST00000543721.1

LMO3-229, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 3,626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-229ENST00000543721 FKBP4Q02790 459 aaKnown RBP eCLIP5.55□□□□□ -1.52
LMO3-229ENST00000543721 XRCC4Q13426 336 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 RTN1Q16799 776 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 DCAF8Q5TAQ9 597 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 ATG9AQ7Z3C6 839 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 EGFL6Q8IUX8 553 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 RNF10Q8N5U6 811 aaKnown RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 USHBP1Q8N6Y0 703 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 RNPC3Q96LT9 517 aaKnown RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 SH3GL3Q99963 347 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 LRRC1Q9BTT6 524 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 PDS5AQ29RF7 1337 aaKnown RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 BICDL2A1A5D9 508 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 CFAP73A6NFT4 308 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 IFIT3O14879 490 aaKnown RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 SRGAP2O75044 1071 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 ZMYND10O75800 440 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 TFRCP02786 760 aaKnown RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 SNRPA1P09661 255 aaKnown RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 SCP2P22307 547 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 TIMM10P62072 90 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 MAP2K1Q02750 393 aaPredicted RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 RIPK1Q13546 671 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 MTMR3Q13615 1198 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 UBE3CQ15386 1083 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 FKBP15Q5T1M5 1219 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 AGBL2Q5U5Z8 902 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 MSL1Q68DK7 614 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 ARHGAP27Q6ZUM4 889 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 CACNA2D4Q7Z3S7 1137 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 APLFQ8IW19 511 aaPredicted RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 GRAMD1CQ8IYS0 662 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 IGDCC4Q8TDY8 1250 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 CYFIP2Q96F07 1278 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 FAXDC2Q96IV6 333 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 CCDC43Q96MW1 224 aaKnown RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 ANKRD27Q96NW4 1050 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 EHD4Q9H223 541 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 NHEJ1Q9H9Q4 299 aaPredicted RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 GDF3Q9NR23 364 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 EXOC1Q9NV70 894 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 BSDC1Q9NW68 430 aaPredicted RBP5.55□□□□□ -1.52
LMO3-229ENST00000543721 TBX22Q9Y458 520 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 PCDHB6Q9Y5E3 794 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 EID1Q9Y6B2 187 aa5.55□□□□□ -1.52
LMO3-229ENST00000543721 A0A0G2JLW4 131 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 ABL1P00519 1130 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 CHGBP05060 677 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 SRGNP10124 158 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 TRIM21P19474 475 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 TRAPPC10P48553 1259 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 ATP1A2P50993 1020 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 CASP7P55210 303 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 GKAP1Q5VSY0 366 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 ZNF790Q6PG37 636 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 RAB11FIP4Q86YS3 637 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 FAM212AQ96EL1 285 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 RBM33Q96EV2 1170 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 OSBPL9Q96SU4 736 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 RNF26Q9BY78 433 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 CNOT10Q9H9A5 744 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 LY9Q9HBG7 655 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 C5orf60A6NFR6 353 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 GCOM1H8Y6P7 765 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 PDE2AO00408 941 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 LIN7AO14910 233 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 RANBP6O60518 1105 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 MYZAPP0CAP1 466 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 MYL6BP14649 208 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 KRT2P35908 639 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 TNNC1P63316 161 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 KCNB1Q14721 858 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 NAA25Q14CX7 972 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 CCDC96Q2M329 555 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 AP1ARQ63HQ0 302 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 HAUS3Q68CZ6 603 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 TLDC1Q6P9B6 456 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 TMED8Q6PL24 325 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 GSPT2Q8IYD1 628 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 ANKS4BQ8N8V4 417 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 ZNF507Q8TCN5 953 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 DHTKD1Q96HY7 919 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 EDEM3Q9BZQ6 932 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 PLCB1Q9NQ66 1216 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 CWC25Q9NXE8 425 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 DMGDHQ9UI17 866 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 ATRNO75882 1429 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 PHRF1Q9P1Y6 1649 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 MYO5AQ9Y4I1 1855 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 MGRN1O60291 552 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 PAEPP09466 180 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 HNRNPH3P31942 346 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 HSPA9P38646 679 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 GRIK3Q13003 919 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 CUL1Q13616 776 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 CCDC38Q502W7 563 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 CROCCP2Q86T23 111 aa5.54□□□□□ -1.52
LMO3-229ENST00000543721 CRACR2BQ8N4Y2 399 aaPredicted RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 TSEN2Q8NCE0 465 aaKnown RBP5.54□□□□□ -1.52
LMO3-229ENST00000543721 SYMPKQ92797 1274 aaKnown RBP5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms