RNA–Protein interactions for RNA: ENST00000541903.6

VPS53-205, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-205ENST00000541903 BACE1P56817 501 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 VGLL4Q14135 290 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 KIAA1755Q5JYT7 1200 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 SAMD1Q6SPF0 538 aaPredicted RBP8.45□□□□□ -1.06
VPS53-205ENST00000541903 FBXO11Q86XK2 927 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 LINC00301Q8NCQ3 95 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 GPT2Q8TD30 523 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 CUL5Q93034 780 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 KIFC2Q96AC6 838 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 COA7Q96BR5 231 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 SLF1Q9BQI6 1058 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 TANGO6Q9C0B7 1094 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 PCDHA6Q9UN73 950 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 PCDHA8Q9Y5H6 950 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 PCDHA1Q9Y5I3 950 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 CLIC4Q9Y696 253 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 SNCAIPQ9Y6H5 919 aa8.45□□□□□ -1.06
VPS53-205ENST00000541903 FAM205CA6NFA0 338 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 PPP6R2O75170 966 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 FLOT1O75955 427 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 SNAP25P60880 206 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 SLC39A14Q15043 492 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 NONOQ15233 471 aaKnown RBP eCLIP8.44□□□□□ -1.06
VPS53-205ENST00000541903 USH1GQ495M9 461 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 TTC38Q5R3I4 469 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 CAVIN1Q6NZI2 390 aaKnown RBP8.44□□□□□ -1.06
VPS53-205ENST00000541903 CCDC174Q6PII3 467 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 DLK2Q6UY11 383 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 CCDC73Q6ZRK6 1079 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.44□□□□□ -1.06
VPS53-205ENST00000541903 LDHDQ86WU2 507 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 ANKRD13AQ8IZ07 590 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 RBM46Q8TBY0 533 aaKnown RBP8.44□□□□□ -1.06
VPS53-205ENST00000541903 RASGRP4Q8TDF6 673 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 C12orf42Q96LP6 360 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 GZF1Q9H116 711 aaPredicted RBP8.44□□□□□ -1.06
VPS53-205ENST00000541903 RANBP17Q9H2T7 1088 aaKnown RBP8.44□□□□□ -1.06
VPS53-205ENST00000541903 RPAP3Q9H6T3 665 aaPredicted RBP8.44□□□□□ -1.06
VPS53-205ENST00000541903 PSTPIP2Q9H939 334 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 RRAGCQ9HB90 399 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 RIC8AQ9NPQ8 531 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 EMILIN3Q9NT22 766 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.44□□□□□ -1.06
VPS53-205ENST00000541903 PNMA2Q9UL42 364 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 CTDP1Q9Y5B0 961 aaPredicted RBP8.44□□□□□ -1.06
VPS53-205ENST00000541903 ATAD5Q96QE3 1844 aa8.44□□□□□ -1.06
VPS53-205ENST00000541903 MYH6P13533 1939 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 A0A1W2PQ27 194 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 A0A1W2PQ64 194 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 A0A1W2PQD8 194 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 M0R2N6 131 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 TOB1P50616 345 aaPredicted RBP8.43□□□□□ -1.06
VPS53-205ENST00000541903 HMGCS2P54868 508 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 PPATQ06203 517 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 PTPAQ15257 358 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 MAP3K11Q16584 847 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 EARS2Q5JPH6 523 aaKnown RBP8.43□□□□□ -1.06
VPS53-205ENST00000541903 JAKMIP3Q5VZ66 844 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 MAP1SQ66K74 1059 aaPredicted RBP8.43□□□□□ -1.06
VPS53-205ENST00000541903 MCTP2Q6DN12 878 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 TEX2Q8IWB9 1127 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 PRPF38AQ8NAV1 312 aaKnown RBP8.43□□□□□ -1.06
VPS53-205ENST00000541903 PGBD1Q96JS3 809 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 ZNF408Q9H9D4 720 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 ELP3Q9H9T3 547 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.43□□□□□ -1.06
VPS53-205ENST00000541903 FBXO28Q9NVF7 368 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 BIN2Q9UBW5 565 aaPredicted RBP8.43□□□□□ -1.06
VPS53-205ENST00000541903 PPP1R9AQ9ULJ8 1098 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 PCDHA7Q9UN72 937 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 PCDHB6Q9Y5E3 794 aa8.43□□□□□ -1.06
VPS53-205ENST00000541903 SPDYE5A6NIY4 337 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 ADAMTS3O15072 1205 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 ZBED4O75132 1171 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 POTEIP0CG38 1075 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 POTEJP0CG39 1038 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 FDX1P10109 184 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 MARCKSP29966 332 aaPredicted RBP8.42□□□□□ -1.06
VPS53-205ENST00000541903 FKBP1BP68106 108 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 AP3B2Q13367 1082 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 DGKZQ13574 1117 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 ZNF174Q15697 407 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 UBE2SQ16763 222 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 INF2Q27J81 1249 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 NOM1Q5C9Z4 860 aaKnown RBP8.42□□□□□ -1.06
VPS53-205ENST00000541903 SH3D19Q5HYK7 790 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 CCDC183Q5T5S1 534 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 ADALQ6DHV7 355 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 NEK8Q86SG6 692 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 ERO1BQ86YB8 467 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 CCAR1Q8IX12 1150 aaKnown RBP8.42□□□□□ -1.06
VPS53-205ENST00000541903 KRI1Q8N9T8 703 aaKnown RBP8.42□□□□□ -1.06
VPS53-205ENST00000541903 FSIP1Q8NA03 581 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 MRPS27Q92552 414 aaKnown RBP8.42□□□□□ -1.06
VPS53-205ENST00000541903 OTUD5Q96G74 571 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 DDX19AQ9NUU7 478 aaKnown RBP8.42□□□□□ -1.06
VPS53-205ENST00000541903 TMEM260Q9NX78 707 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 CCPG1Q9ULG6 757 aa8.42□□□□□ -1.06
VPS53-205ENST00000541903 MRPL11Q9Y3B7 192 aaKnown RBP8.42□□□□□ -1.06
VPS53-205ENST00000541903 AFG3L2Q9Y4W6 797 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms